View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7886_low_6 (Length: 248)

Name: NF7886_low_6
Description: NF7886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7886_low_6
NF7886_low_6
[»] chr4 (6 HSPs)
chr4 (3-234)||(6020418-6020649)
chr4 (23-145)||(48804142-48804262)
chr4 (3-185)||(26070742-26070923)
chr4 (3-76)||(42912510-42912583)
chr4 (18-176)||(51702150-51702303)
chr4 (120-198)||(42912426-42912504)
[»] chr2 (2 HSPs)
chr2 (3-180)||(20262652-20262825)
chr2 (89-179)||(28772046-28772136)
[»] chr1 (2 HSPs)
chr1 (18-180)||(24886629-24886787)
chr1 (19-87)||(27292234-27292303)
[»] chr3 (2 HSPs)
chr3 (24-182)||(51925801-51925956)
chr3 (89-190)||(28690213-28690314)
[»] chr7 (1 HSPs)
chr7 (3-151)||(26285960-26286104)
[»] chr8 (1 HSPs)
chr8 (18-186)||(26130118-26130285)
[»] chr5 (2 HSPs)
chr5 (18-179)||(12658521-12658677)
chr5 (22-85)||(25640394-25640458)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 6020649 - 6020418
Alignment:
Q  3 agtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtga 102  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6020649 agtggttaagacaataactctaaacaacactactatggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtga 6020550  T
Q  103 atgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaacatcaacaaaccataaacacc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  6020549 atgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttccaaggtccaaaagctccctaaaaaacatcaacaaaccataaacgcc 6020450  T
Q  203 ctttcggatcaaaccaatcagagtgatgtcca 234  Q
    |||||||| ||||||||||||||||| |||||    
T  6020449 ctttcggaccaaaccaatcagagtgaagtcca 6020418  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 48804262 - 48804142
Alignment:
Q  23 taaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagta 122  Q
    ||||||||||||||||||| || ||||| ||||||||||||||| |||||||||  ||||||||  |||||||||||||| || |||||||||| | |||    
T  48804262 taaacaacactactacggacagcccagcgaacccacgtgtggatacgaaaccgaactgcaaaaa--aaaatgcagagtgagtggttagagtatcaaggta 48804165  T
Q  123 ggtgtatgaatcgtctaccaaca 145  Q
    || ||||||||||||| ||||||    
T  48804164 ggcgtatgaatcgtctgccaaca 48804142  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 26070923 - 26070742
Alignment:
Q  3 agtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtga 102  Q
    |||||| |||| || |||||||||||||||||||||||||||  |||| ||||||| ||||||| |||| ||||  |||||||   || | |||||||||    
T  26070923 agtggtaaagaaaacaactctaaacaacactactacggatagcgcagcgaacccacatgtggatacgaagccgaaatgcaaaa---aagacgcagagtga 26070827  T
Q  103 atgtttagagtat--ccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaacatc 185  Q
    ||||| | |||||    | |||||  | |||||||||  |||||| |||||||  | ||||||||| | ||||||||||||||||    
T  26070826 atgttcaaagtattataaggtaggcatttgaatcgtccgccaacacagaaacgacccaaggtccaacaactccctaaaaaacatc 26070742  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 42912583 - 42912510
Alignment:
Q  3 agtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccga 76  Q
    |||||| |||| || |||||||||||||||||| ||||| | |||||| || ||||||||||||||||||||||    
T  42912583 agtggtaaagaaaacaactctaaacaacactaccacggacaatccagcgaatccacgtgtggatgcgaaaccga 42912510  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 51702303 - 51702150
Alignment:
Q  18 aactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatcc 117  Q
    |||||||||||||||| | ||||  | |||||| ||||||||| ||||| ||||||||| || ||||||| || ||  ||||||||||||  |||||| |    
T  51702303 aactctaaacaacacttccacgggcaatccagcgaacccacgtatggattcgaaaccgaattacaaaaaaaaacat--agagtgaatgttccgagtat-c 51702207  T
Q  118 aagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctcccta 176  Q
    ||||  | ||||||||||||| |||| | ||||||| || ||||||||  |||||||||    
T  51702206 aagt--gcgtatgaatcgtctgccaaaacagaaacgatccaaggtccagcagctcccta 51702150  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 42912504 - 42912426
Alignment:
Q  120 gtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaacatcaacaaaccataaa 198  Q
    ||||||||||||||||||| | |||| |||| || || ||||||||| |||||||| |||||||||| ||| |||||||    
T  42912504 gtaggtgtatgaatcgtctgctaacacagaagcgatccaaggtccaacagctccctgaaaaacatcagcaagccataaa 42912426  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 20262652 - 20262825
Alignment:
Q  3 agtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtga 102  Q
    |||||| |||| || |||||||||||||| ||||||||| |  ||||| ||||||||| ||||| |||||  ||  ||||||    ||||||||||||||    
T  20262652 agtggtaaagaaaacaactctaaacaacaatactacggacaacccagcgaacccacgtatggatacgaaattgaactgcaaa----aaaatgcagagtga 20262747  T
Q  103 atgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaa 180  Q
    | |||||||||||  | ||||| ||||||||||||| |||||| ||||||| |  ||||||||| |||||||||||||    
T  20262748 aagtttagagtattaaggtaggcgtatgaatcgtctgccaacacagaaacgattcaaggtccaacagctccctaaaaa 20262825  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 28772046 - 28772136
Alignment:
Q  89 aaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaa 179  Q
    ||||||||| |||||||||||||||||| | ||||||||||||||||| | ||| || |||||   || ||||||||| ||||||||||||    
T  28772046 aaaatgcagcgtgaatgtttagagtatcaaggtaggtgtatgaatcgtttgccagcacagaaatcatccaaggtccaacagctccctaaaa 28772136  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 24886787 - 24886629
Alignment:
Q  18 aactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatcc 117  Q
    ||||||||||||||||||||| || || ||||| ||||||||| ||||| |||||||||  ||||||    |||| ||| |||||| |||||||||||      
T  24886787 aactctaaacaacactactacagacagcccagcgaacccacgtatggatacgaaaccgaactgcaaa----aaaacgcatagtgaaagtttagagtatta 24886692  T
Q  118 aagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaa 180  Q
    | |||||  ||||||||||||||||||| ||||||| |  ||||||||| |||||| ||||||    
T  24886691 aggtaggaatatgaatcgtctaccaacacagaaacgattcaaggtccaacagctccataaaaa 24886629  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 27292234 - 27292303
Alignment:
Q  19 actctaaacaa-cactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaa 87  Q
    ||||||||||| |||||| ||||| |  |||||||||||||||||||   ||||||||| ||||||||||    
T  27292234 actctaaacaatcactaccacggacaaaccagcaaacccacgtgtgggcacgaaaccgaattgcaaaaaa 27292303  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 182
Target Start/End: Original strand, 51925801 - 51925956
Alignment:
Q  24 aaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtag 123  Q
    ||||||||||||||| |  || ||| | ||||||| ||||||| ||||||| |  || ||||   |||||||||  ||||||||||||||||| | ||||    
T  51925801 aaacaacactactacagccagcccaacgaacccacatgtggatacgaaaccaaactggaaaa---aaaatgcagcatgaatgtttagagtatcaaggtag 51925897  T
Q  124 gtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaac 182  Q
    | ||||||||||||| |||||| | |||||  | ||||||||| |||||||||||||||    
T  51925898 gcgtatgaatcgtctgccaacacataaacgacccaaggtccaacagctccctaaaaaac 51925956  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 190
Target Start/End: Complemental strand, 28690314 - 28690213
Alignment:
Q  89 aaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaacatcaac 188  Q
    |||| |||| ||||||||||| |||||| | ||| | |||||||||| || |||||| | ||||| || ||||||||| | || |||||||||  |||||    
T  28690314 aaaacgcagcgtgaatgtttatagtatcgaggtaagcgtatgaatcgcctgccaacacataaacgatccaaggtccaacaacttcctaaaaaaattcaac 28690215  T
Q  189 aa 190  Q
    ||    
T  28690214 aa 28690213  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 26285960 - 26286104
Alignment:
Q  3 agtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtga 102  Q
    ||||||||||| || |||||||||||| |||||||| || ||  |||  ||||| ||||||||| | ||||| |  |||||||||    | |||||||||    
T  26285960 agtggttaagaaaacaactctaaacaagactactacagacagatcagtgaaccctcgtgtggatacaaaaccaaactgcaaaaaa----acgcagagtga 26286055  T
Q  103 atgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaa 151  Q
    | |||||||||||| ||||||| ||||||||||||| |||||| |||||    
T  26286056 aagtttagagtatcaaagtaggcgtatgaatcgtctgccaacacagaaa 26286104  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 26130285 - 26130118
Alignment:
Q  18 aactctaaacaacactactacgg---atagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagta 114  Q
    |||||||||||||| |||||| |   | || ||||| ||||||||||||||| ||||||| |  |||||||||  |    | |||||  |||||||||||    
T  26130285 aactctaaacaacagtactactgcagacagcccagcgaacccacgtgtggatacgaaaccaaactgcaaaaaaaca----ctgagtgggtgtttagagta 26130190  T
Q  115 tccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaacatca 186  Q
    || | ||||| ||||||||||||| |||| | ||||||| |  ||| ||||| |||||||||||||||||||    
T  26130189 tctaggtaggcgtatgaatcgtctgccaaaacagaaacgattcaagatccaacagctccctaaaaaacatca 26130118  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 12658677 - 12658521
Alignment:
Q  18 aactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatcc 117  Q
    |||||||||| | ||||| ||||| | ||||||| | |||||| ||||||||||||||| |||||||     ||||||||||||  |||| | |||||      
T  12658677 aactctaaaccaaactaccacggacaatccagcacaaccacgtatggatgcgaaaccgaattgcaaa-----aaatgcagagtggttgttcatagtatta 12658583  T
Q  118 aagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaa 179  Q
    ||||||  ||||| ||| ||| |||||| | ||||| || ||||||||  ||||||||||||    
T  12658582 aagtagacgtatggatcatctgccaacacataaacgatccaaggtccagcagctccctaaaa 12658521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 25640394 - 25640458
Alignment:
Q  22 ctaaacaa-cactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaa 85  Q
    |||||||| |||||| ||||| | |||||| |||||||||||||  |||||||||| ||||||||    
T  25640394 ctaaacaatcactaccacggacaatccagcgaacccacgtgtgggcgcgaaaccgaattgcaaaa 25640458  T

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