View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7887_high_1 (Length: 548)
Name: NF7887_high_1
Description: NF7887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7887_high_1 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 534; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 3 - 548
Target Start/End: Complemental strand, 25323466 - 25322921
Alignment:
| Q |
3 |
tatgtgggttcggctacatgaatcaaacaatatcaatggaagatattatatacaatatatataactgaaagggataaaatgtagtacatgcatatacaat |
102 |
Q |
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| T |
25323466 |
tatgtgggttcggctacatgaatcaaacaatatcaatggaagatattatatacaatatatataactgaaagggataaaatgtagtagatgcatatacaat |
25323367 |
T |
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| Q |
103 |
atcttacttatatatgtgttttataagttgaagttcttcacctaaaaatactttgcactaaggaaatacttgattttgtgcaggaagatgtgcaactcat |
202 |
Q |
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| T |
25323366 |
atcttacttatatatgtgttttataagttgaagttcttcacctaaaaatactttgcactaaggaaatacttgattttgtgcaggaagatgtgcaactcat |
25323267 |
T |
|
| Q |
203 |
ggccaacatgggcttagatgcctatagattttcaatatcatggtcaagacttattccaggtaagatcaccaaaatgttggcttagacatgcttaattcga |
302 |
Q |
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| T |
25323266 |
ggccaacatgggcttagatgcctatagattttcaatatcatggtcaagacttattccaggtaagatcaccaaaatgttggctgagacatgcttaattcga |
25323167 |
T |
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| Q |
303 |
tgccgaacataatgtcaaaagttagtgcacttgacacagtcggtttggttaaactgcatgattcaccaagtgcgtgttagattgacggtgaatttggcga |
402 |
Q |
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| T |
25323166 |
tgccgaacataatgtcaaaagttagtgcacttgacacagtcggtttggttaaactgcatgattcaccaagtgcgtgttagattgacggtgaatttggcga |
25323067 |
T |
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| Q |
403 |
aatcaatgtgacgtcatgattttgtcgaagtttcggagcgttgtttttgctaaaagcacgatggcataccgtgatactaccaaacccattgtcggtccaa |
502 |
Q |
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| T |
25323066 |
aatcaatgtgacgtcatgattttgtcgaagtttcggagcgttgtttttgctaaaagcacgatggcataccgtgatactaccaaacccattgtcggtccaa |
25322967 |
T |
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| Q |
503 |
acatgcatagtgccctaagtcaatttgattataattgtctagcatt |
548 |
Q |
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| T |
25322966 |
acatgcatagtgcgctaagtcaatttgattataattgtctagcatt |
25322921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 25329662 - 25329568
Alignment:
| Q |
171 |
cttgattttgtgcaggaagatgtgcaactcatggccaacatgggcttagatgcctatagattttcaatatcatggtcaagacttattccaggtaa |
265 |
Q |
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| T |
25329662 |
cttgatttcctgcaggaagatgtcgaactcatggccaacatgggcttagatgcctatagattttcaatatcatggtcaagacttattccgggtaa |
25329568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 543
Target Start/End: Complemental strand, 25325691 - 25325637
Alignment:
| Q |
489 |
cattgtcggtccaaacatgcatagtgccctaagtcaatttgattataattgtcta |
543 |
Q |
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| T |
25325691 |
cattgttgttccaaacatgcatagtgccctaactcagtttgaatatagttgtcta |
25325637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 5220385 - 5220300
Alignment:
| Q |
184 |
aggaagatgtgcaactcatggccaacatgggcttagatgcctatagattttcaatatcatggtcaagacttattccaggtaagatc |
269 |
Q |
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| T |
5220385 |
aggatgatgtccaactaatgtctaaaatgggcttagatgcctatagattttccatatcatggtcaagacttattccaggtatgatc |
5220300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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