View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7888_high_1 (Length: 624)
Name: NF7888_high_1
Description: NF7888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7888_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 18 - 612
Target Start/End: Original strand, 5019862 - 5020455
Alignment:
| Q |
18 |
aatcaatgatatgattatgcttgtgaacaagtgaccaaaattcaaggtcacctttctccagtaatgctaccaagttggtttggtttttgaaccatatatt |
117 |
Q |
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| T |
5019862 |
aatcaatgatatgattatgcttgtgaacaagtgaccaaaattcaaggtcacctttctccagtaatgctaccaagttggtttggtttttgaaccatatatt |
5019961 |
T |
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| Q |
118 |
gataattttgttctttttctgagaccaaaccaaaagattggatgtgtgaaatacgttcacagtgaatcaataatatgataatgataccaagttaaaatgg |
217 |
Q |
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| T |
5019962 |
gataattttgttctttttctgagaccaaaccaaaagattggatgtgtgaaatacgttcacagtgaatcaataatatgataatgataccaagttaaaatgg |
5020061 |
T |
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| Q |
218 |
attagtttctaacgactctggtgttttactttttcaactatacatggaatatagaatggactaagttaaaatgttatgggatttttacgactttggttca |
317 |
Q |
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| T |
5020062 |
attagtttctaacgactctggtgttttactttttcaactatacatggaatatagaatggactaagttaaaatgttatgggatttttacgactttggttca |
5020161 |
T |
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| Q |
318 |
tatttttaataattttgaataaaaatgataaacaatgaaatcttattctcaatgctctatcacaagtcatgcaatcttgtctcagttccatgaaatattt |
417 |
Q |
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| T |
5020162 |
tatttttaataattttgaataaaaatgataaacaatgaaatcttattctcaatgctctatcacaagtcatgcaatcttgtctcagttccatgaaatattt |
5020261 |
T |
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| Q |
418 |
cnnnnnnnnnnnncctccactgttaggaggtcaaatcaccatcacctactactactgtttctaatctccatcacctactatatatattttgattttgatt |
517 |
Q |
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| T |
5020262 |
c-tttttttttttcctccactgttaggaggtcaaatcaccatcacctactactactgtttctaatctccatcacctactatatatattttgattttgatt |
5020360 |
T |
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| Q |
518 |
tctcaagttagatgttttataaatattgttattacnnnnnnnaattatgataaatttaaataaatatatgtgtatccgtgttagagttctatatt |
612 |
Q |
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| T |
5020361 |
tctcaagttagatgttttataaatattgttattactttttttaattatgataaatttaaataaatatatgtgtatccgtgttagagttctatatt |
5020455 |
T |
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