View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7888_high_3 (Length: 467)
Name: NF7888_high_3
Description: NF7888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7888_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 96 - 450
Target Start/End: Original strand, 16473127 - 16473481
Alignment:
| Q |
96 |
attagaatattgttatcaaggctcattttcacttataaatgaaaaacttaaaccaaaataatgacgaaagaagttgattgatataaaattacctgttgac |
195 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
16473127 |
attagaatattgttatcaaggctcattttcagttataaatgaaaaacttaaaccaaaataacgacgaaagaagttgattgatataaagttacctgttgac |
16473226 |
T |
|
| Q |
196 |
attgcaatcccatccagcataatttgcagcttccatcaaaccattcctccattcttgcacttttatcttcttcttaaagctcttctcgtgcttatcaaaa |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| |||| |
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| T |
16473227 |
attgcaatcccatccagcataatttgcagcttccatcaaaccattcctccattcttgcacttttatcttcttcttaaagttcctctcgtggttattaaaa |
16473326 |
T |
|
| Q |
296 |
gcctcagcatagcttcctctctggttcctaacatcagaaggatcaacgtcatagaaaataggcactacaatttgccctttcatctttttaatttccagta |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16473327 |
gcctcagcatagcttcctctctggttcctaacatcagaaggatcaacgtcatagaaaataggcactacaatttgccctttcatctttttaatttccagta |
16473426 |
T |
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| Q |
396 |
ttttcataagctcttccaaacaccatttcgacaccgcatagtttttagagaaaac |
450 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16473427 |
ttttcataagctcttccaaacaccatttcgacaccgcatagtttttagagaaaac |
16473481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 96 - 450
Target Start/End: Original strand, 16465826 - 16466180
Alignment:
| Q |
96 |
attagaatattgttatcaaggctcattttcacttataaatgaaaaacttaaaccaaaataatgacgaaagaagttgattgatataaaattacctgttgac |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| |
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| T |
16465826 |
attagaatattgttatcaaggctcattttcacttataaatgaaaaacttaaaccaaaataatgacgaaagaagttgattgctataaagttacctattgac |
16465925 |
T |
|
| Q |
196 |
attgcaatcccatccagcataatttgcagcttccatcaaaccattcctccattcttgcacttttatcttcttcttaaagctcttctcgtgcttatcaaaa |
295 |
Q |
| |
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||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || |||| | ||||| |||||| ||||| |
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| T |
16465926 |
attacaatcccaaccagcataatttgcagcttccaacaaaccattcctccattcttgcacctttatcttcccctcaaagttgttctcatgcttagcaaaa |
16466025 |
T |
|
| Q |
296 |
gcctcagcatagcttcctctctggttcctaacatcagaaggatcaacgtcatagaaaataggcactacaatttgccctttcatctttttaatttccagta |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
16466026 |
gcctcagcatagcttcctctctggttcctaacatcagaaggatcaacgtcatagaaaacaggcactacaatttgccctttcatctttttaatttcgagta |
16466125 |
T |
|
| Q |
396 |
ttttcataagctcttccaaacaccatttcgacaccgcatagtttttagagaaaac |
450 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16466126 |
ttttcataagctcttccaaacaccattttgacaccgcatagtttttagagaaaac |
16466180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 161 - 450
Target Start/End: Original strand, 16494354 - 16494643
Alignment:
| Q |
161 |
gaaagaagttgattgatataaaattacctgttgacattgcaatcccatccagcataatttgcagcttccatcaaaccattcctccattcttgcactttta |
260 |
Q |
| |
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|||| ||||||||||||| ||| ||||||||| |||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| || | |
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| T |
16494354 |
gaaacaagttgattgataaaaagttacctgttaacattgcaatcccaaccagagtaattagcagcttccatcaaaccattcctccattcttgcaccttaa |
16494453 |
T |
|
| Q |
261 |
tcttcttcttaaagctcttctcgtgcttatcaaaagcctcagcatagcttcctctctggttcctaacatcagaaggatcaacgtcatagaaaataggcac |
360 |
Q |
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|||||| | | | ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |
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| T |
16494454 |
tcttctcttcagaattcttctcatgcttagcaaaagcctcagcatagcttcctctctggttcctaacatcggtaggatcaacatcatagaaaataggcac |
16494553 |
T |
|
| Q |
361 |
tacaatttgccctttcatctttttaatttccagtattttcataagctcttccaaacaccatttcgacaccgcatagtttttagagaaaac |
450 |
Q |
| |
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||| |||| |||||||||| ||||| ||| || |||||||||||||| |||||||| |||| ||| |||||||||||||||||||||| |
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| T |
16494554 |
taccattttccctttcatccttttacattcaagaattttcataagctcatccaaacaaaatttagacgccgcatagtttttagagaaaac |
16494643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 16472854 - 16472929
Alignment:
| Q |
4 |
atcaagcaaactagtgaattggttagttccatgttcaacattggattggtcggttcatcggattattaaaatattg |
79 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16472854 |
atcaaacaaactagtgaattggttagttccatgttcaacattggattggtcggttcatcggattattagaatattg |
16472929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 16465773 - 16465837
Alignment:
| Q |
15 |
tagtgaattggttagttccatgttcaacattggattggtcggttcatcggattattaaaatattg |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||| |
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|
| T |
16465773 |
tagtgaattggttagttccatgttcaacattggactggtctgttcattggattattagaatattg |
16465837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 420
Target Start/End: Original strand, 16460524 - 16460666
Alignment:
| Q |
278 |
ttctcgtgcttatcaaaagcctcagcatagcttcctctctggttcctaacatcagaaggatcaacgtcatagaaaataggcactacaatttgccctttca |
377 |
Q |
| |
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||||| || ||| ||||||| |||||||| |||||| | ||||| | |||| ||| ||||| | ||||||||||| |||| | ||||||||| |||| |
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| T |
16460524 |
ttctcatgtttaacaaaagcttcagcataacttcctgtttggttgcgcacatgagatggatctatatcatagaaaatcggcaaaagaatttgccccttca |
16460623 |
T |
|
| Q |
378 |
tctttttaatttccagtattttcataagctcttccaaacacca |
420 |
Q |
| |
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|||| ||| |||||||||||||| ||||| ||||||||||| |
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| T |
16460624 |
tcttcttacattccagtattttcacgagctcatccaaacacca |
16460666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 420
Target Start/End: Original strand, 16499642 - 16499718
Alignment:
| Q |
344 |
tcatagaaaataggcactacaatttgccctttcatctttttaatttccagtattttcataagctcttccaaacacca |
420 |
Q |
| |
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||||| ||||| |||| ||||||||||| ||||||| ||| ||| |||||||||| |||||| ||||||||||| |
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| T |
16499642 |
tcataaaaaattggcaaaacaatttgccccctcatcttcttacattctagtattttcacaagctcgtccaaacacca |
16499718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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