View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7888_high_5 (Length: 223)
Name: NF7888_high_5
Description: NF7888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7888_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 39272831 - 39272609
Alignment:
| Q |
1 |
tgaagtaactgagcctatgcttcggaaacgctatgatcgtccacgaaatcataagaagggtcatgtagcattcaaaactgtgctagaggaggctataaca |
100 |
Q |
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| T |
39272831 |
tgaagtaactgagcctatgcttcggaaacgctatgatcgtccacgaaatcataagaagggtcatgtagcattcaaaactgtgctagaggagcctataaca |
39272732 |
T |
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| Q |
101 |
ccaccagctgtggcagagactgatattgccactactgaacgtgtaaattcatttcagagtgttgatacaaaagctgatgcgtttatttagatggagcatc |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39272731 |
ccaccagctgtagcagagactgatattgccactactgaacgtgtaaattcatttcagagtgttgatacaaaagctgatgcgtttattaagatggagcata |
39272632 |
T |
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| Q |
201 |
ggaggattgaattctctagactc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
39272631 |
ggaggattgaattctctagactc |
39272609 |
T |
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