View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7889_high_2 (Length: 335)
Name: NF7889_high_2
Description: NF7889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7889_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 321
Target Start/End: Original strand, 7684142 - 7684461
Alignment:
| Q |
3 |
gagtttcgtgttggagtttacattaatgctccacaaagcaccattactatttcaatacattaaatatggaatgaattaagaagcgcatgaaatgcannnn |
102 |
Q |
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| T |
7684142 |
gagtttcatgttggagtttacattaatgctccacaaagcaccattactatttcaatacattaaatatggagtgaattaagaagcgtatgaaatgcatttt |
7684241 |
T |
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| Q |
103 |
nnnnncttaattaatcagttaaagatt-----ggatcacattagtaaaaggtgtagatagaaggggcattaggttggaggagggagaatggattgggtgt |
197 |
Q |
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| T |
7684242 |
tttt-cttaattaatcagttaaagattggattggatcacattagtaaaaggtgtagatagaaggggcattaggttggaggagggagaatggattgtgtgt |
7684340 |
T |
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| Q |
198 |
ggtgtcccttcccgggttaagtactttctgcacttctctccgttattcaataaaattttatg-taaagaaaaaagaaagtaaaaggttgtagaatggaca |
296 |
Q |
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| T |
7684341 |
gatgtccattcccgggttaagtactttctgaacttctctccgttattcaataaaatttgatgttaaagaaa----aaagttaaaggttgtagaatggata |
7684436 |
T |
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| Q |
297 |
agtacagaaccaagaagagcaagtt |
321 |
Q |
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| T |
7684437 |
agtacagaaacaagaagagcaagtt |
7684461 |
T |
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