View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7889_low_1 (Length: 428)
Name: NF7889_low_1
Description: NF7889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7889_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 9 - 411
Target Start/End: Original strand, 40310580 - 40310979
Alignment:
| Q |
9 |
ccacagggcccgtttattattattgacaattaagttatgttagagaaaaaacatagaggttgatgagattagaccggtcaaatatacatgtactggtctc |
108 |
Q |
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| T |
40310580 |
ccacagggctcatttattattattgacaattaagttatgttagagaaaaaacatagaggttgatgagattagaccggtcaaatatacatgtactggtctc |
40310679 |
T |
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| Q |
109 |
tctgcatgggaattgagtta-tggttaaagatttcagctattttatttgtatatgccacaatatgtttatatataggtctgtcctctgagtttatgtgac |
207 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40310680 |
tctgcatgggaattgagttaatggttaaagatttcagctattttatttgtatatgccacaatatgtttatatataggtctgtcctctgagtttatgtgac |
40310779 |
T |
|
| Q |
208 |
agaccaacttttgctactgactgagtccaacactgatacctgcttctgcttttgagtgagtatcatcatcaccaacaccagcaacagaaaccagtgtttt |
307 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40310780 |
agaccaacttttgctactg----agtccaacactgatacctgcttctgcttttgagtgagtatcatcatcaccaacaccagcaacagaaaccagtgtttt |
40310875 |
T |
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| Q |
308 |
cctttccttctatcattttcaagagtcctctcatatcttgataactcatatggcagctttttcataccaataccaacaaccctttcttgttgactctaca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40310876 |
cctttccttctatcattttcaagagtcctctcatatcttgataactcatatggcagctttttcataccaataccaacaaccctttcttgttgactctaca |
40310975 |
T |
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