View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7889_low_4 (Length: 237)
Name: NF7889_low_4
Description: NF7889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7889_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 52212431 - 52212208
Alignment:
| Q |
1 |
agaaagcgacataaaattcaaaaatcctctttctataagaaaagctaatacatcagatccaaaagatgaaacagacaataatccatgaaaaagaaatgag |
100 |
Q |
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| T |
52212431 |
agaaagcgacataaaattcaaaaatcctctttctataagaaaagctaatacatcagatccaaaagatgaaacagacaataatccatgaaaaagaaatgag |
52212332 |
T |
|
| Q |
101 |
aaatgtaattacagcttcaacttcagtttcagaaacaattcgaacaccatctctgttaacaagcagatctccatccttaaacgttccactttcagtccta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52212331 |
aaatgtaattacagcttcaacttcagtttcagaaacaattcgaacaccatctctgttaacaagcagatctccatccttaaacgttccactttcagtccta |
52212232 |
T |
|
| Q |
201 |
caacaatacccacatgtcaaaatt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
52212231 |
caacaatacccacatgtcaaaatt |
52212208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 17777781 - 17777875
Alignment:
| Q |
109 |
ttacagcttcaacttcagtttcagaaacaattcgaacaccatctctgttaacaagcagatctccatccttaaacgttccactttcagtcctacaa |
203 |
Q |
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| T |
17777781 |
ttacagtttcaacttcactttgagaaacaattctaactccatctttattaacaagcaagttcccttctttaaaagtaccactttgagtcctacaa |
17777875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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