View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7890_high_4 (Length: 338)
Name: NF7890_high_4
Description: NF7890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7890_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 4287464 - 4287222
Alignment:
| Q |
1 |
aaacatatagatttgagatttcattttcttagagacctcgctaaagatggagtgagtgagctagttcatttcaacacaaatgatcaagtatatatcttgc |
100 |
Q |
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| T |
4287464 |
aaacatatagatttgagatttcattttcttagagacctcgctaaagatggagtgagtgagctagttcatttcaacacaaatgatcaagtatatatcttgc |
4287365 |
T |
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| Q |
101 |
gtcataacacagaacctttaaaaaggatcaccttttagcaactgcaagatagattgaaagtgtataaaatgatagattaaactgattac-aaattgcaat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4287364 |
gtcataacacagaacctttaaaaaggatcaccttttagcaactgcaagatagattgaaagtgtataaaatgatagattaaactgattacaaaattgcaat |
4287265 |
T |
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| Q |
200 |
tcatattaagggatgattcgaaattagtttctaagacagtaaa |
242 |
Q |
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| T |
4287264 |
tcatattaagggatgattcgaaattagtttcgaagacagtaaa |
4287222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 19990313 - 19990230
Alignment:
| Q |
1 |
aaacatatagatttgagatttcattttcttagagacctcgctaaagatggagtgagtgagctagttcatttcaacacaaatgat |
84 |
Q |
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|||||||| ||||||||||||||||||||||| |||||| |||||||||| ||| ||| |||||||||| ||| ||||||||| |
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| T |
19990313 |
aaacatattgatttgagatttcattttcttagtgacctcattaaagatggaatgattgatctagttcattacaaaacaaatgat |
19990230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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