View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7890_high_6 (Length: 253)

Name: NF7890_high_6
Description: NF7890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7890_high_6
NF7890_high_6
[»] chr7 (6 HSPs)
chr7 (4-143)||(3704488-3704627)
chr7 (4-90)||(3696943-3697029)
chr7 (37-143)||(21017604-21017710)
chr7 (37-143)||(37348865-37348971)
chr7 (87-143)||(3697755-3697811)
chr7 (200-233)||(3704683-3704716)
[»] chr5 (1 HSPs)
chr5 (37-141)||(13163731-13163835)
[»] chr8 (2 HSPs)
chr8 (37-143)||(27824329-27824435)
chr8 (37-143)||(26720072-26720178)
[»] chr6 (1 HSPs)
chr6 (37-140)||(10711742-10711845)
[»] scaffold0288 (1 HSPs)
scaffold0288 (37-143)||(19601-19707)
[»] chr1 (1 HSPs)
chr1 (37-141)||(35973099-35973203)
[»] chr3 (1 HSPs)
chr3 (37-143)||(22942468-22942574)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 3704488 - 3704627
Alignment:
Q  4 taagttataaacgttttagttttggtttctgcctacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgat 103  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3704488 taagttataaacgttttagttttggtttttgcctacaaaaatgtgtatgtggcaaacagagggtgatgtggtggcgtgtgacatggcacacgatgttgat 3704587  T
Q  104 gtgtcgttctaaatgatgagtcacaaagttagagggacca 143  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  3704588 gtgtctttctaaatgatgagtcacaaagttagagggacca 3704627  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 3696943 - 3697029
Alignment:
Q  4 taagttataaacgttttagttttggtttctgcctacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggc 90  Q
    ||||||||||||||||||||||||||  || |||||||||||||  |||||||||||| |||||||||||| || ||||||||||||    
T  3696943 taagttataaacgttttagttttggtccctacctacaaaaatgttaatgtggcaaacaaagggtgatgtggcggcgtgtgacatggc 3697029  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 21017710 - 21017604
Alignment:
Q  37 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 136  Q
    |||||||| ||  |||||||||| ||||| ||| || ||| |||||||||||||| || | ||||||||||||||| | ||| |||||||||||||||||    
T  21017710 tacaaaaacgtccatgtggcaaatagaggatgacgtcgtgatgtgtgacatggcagacaacgttgatgtgtcgttccatatgctgagtcacaaagttaga 21017611  T
Q  137 gggacca 143  Q
    |||||||    
T  21017610 gggacca 21017604  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 37348865 - 37348971
Alignment:
Q  37 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 136  Q
    ||||||||||| ||||||| |||| |||| |||  ||| |  ||||||| ||||| | || ||||||||||| ||| | ||| ||||||||||| |||||    
T  37348865 tacaaaaatgtctatgtggaaaacggaggatgacatggcgacgtgtgacgtggcagatgacgttgatgtgtcattccatatgctgagtcacaaaattaga 37348964  T
Q  137 gggacca 143  Q
    |||||||    
T  37348965 gggacca 37348971  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 3697755 - 3697811
Alignment:
Q  87 tggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttagagggacca 143  Q
    ||||||||||   |||||||||||| || ||| ||||||||||||||||||||||||    
T  3697755 tggcacacgacactgatgtgtcgttttagatgttgagtcacaaagttagagggacca 3697811  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 3704683 - 3704716
Alignment:
Q  200 attcacaatttaaaaacatcggctcttccatctt 233  Q
    ||||||||||||||||||| ||||||||||||||    
T  3704683 attcacaatttaaaaacattggctcttccatctt 3704716  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 13163835 - 13163731
Alignment:
Q  37 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 136  Q
    ||||||||| | ||| || || ||||||| |||||||||||  |||||||||||| |||||||||||||||||||| | || ||||||| ||||||||||    
T  13163835 tacaaaaatatatatatgacacacagaggatgatgtggtggcatgtgacatggcagacgatgttgatgtgtcgttccagataatgagtcgcaaagttaga 13163736  T
Q  137 gggac 141  Q
    |||||    
T  13163735 gggac 13163731  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 27824435 - 27824329
Alignment:
Q  37 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 136  Q
    |||||||| || |||||||||||| |||| ||| ||||| ||||||||  ||| | | |||||||||||||| ||||| ||| |||||||||||||||||    
T  27824435 tacaaaaacgtatatgtggcaaacggaggttgacgtggttgtgtgtgatgtggtagatgatgttgatgtgtcattctagatgttgagtcacaaagttaga 27824336  T
Q  137 gggacca 143  Q
    |||||||    
T  27824335 gggacca 27824329  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 26720178 - 26720072
Alignment:
Q  37 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 136  Q
    |||||||| || ||||||||||||||||  | | |||| |  ||||||||||| | |||| ||||||||||||||| | ||| |||||||||||||||||    
T  26720178 tacaaaaacgtctatgtggcaaacagagcataacgtggcgacgtgtgacatggaaaacgacgttgatgtgtcgttccatatgctgagtcacaaagttaga 26720079  T
Q  137 gggacca 143  Q
    |||||||    
T  26720078 gggacca 26720072  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 10711845 - 10711742
Alignment:
Q  37 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 136  Q
    ||||||||| | ||||||||||| ||||| |||||||| |   |||||  ||||| |||| ||||| ||||| ||  ||||| |||||||||||||||||    
T  10711845 tacaaaaatatttatgtggcaaatagaggatgatgtggcgacatgtgatgtggcagacgacgttgaagtgtcatttcaaatgttgagtcacaaagttaga 10711746  T
Q  137 ggga 140  Q
    ||||    
T  10711745 ggga 10711742  T

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Target: scaffold0288 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 19601 - 19707
Alignment:
Q  37 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 136  Q
    |||||||| || ||||||||||| ||||| |||  |||    ||||||||| ||| |||| ||||| ||||||||| | ||| |||||||||||||||||    
T  19601 tacaaaaacgtctatgtggcaaatagaggatgacatggcaacgtgtgacattgcatacgacgttgacgtgtcgttccatatgctgagtcacaaagttaga 19700  T
Q  137 gggacca 143  Q
     ||||||    
T  19701 aggacca 19707  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 35973203 - 35973099
Alignment:
Q  37 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 136  Q
    |||||||| || |||||||||||| |||| ||| ||||    ||||||| ||||| |||| ||||||||||||||| | | |  ||||||||||||| ||    
T  35973203 tacaaaaacgtctatgtggcaaacggaggctgacgtggcaacgtgtgacgtggcagacgacgttgatgtgtcgttccataagccgagtcacaaagttgga 35973104  T
Q  137 gggac 141  Q
    |||||    
T  35973103 gggac 35973099  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 22942468 - 22942574
Alignment:
Q  37 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 136  Q
    |||||||| || ||||||||||||| ||| ||| ||||   |||||||  ||| | ||||| |||||||||| ||| | |||  |||||||||||||| |    
T  22942468 tacaaaaaagtctatgtggcaaacataggatgacgtggcaatgtgtgatgtggaagacgatattgatgtgtcattccatatgccgagtcacaaagttaaa 22942567  T
Q  137 gggacca 143  Q
    |||||||    
T  22942568 gggacca 22942574  T

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