View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7890_high_7 (Length: 246)

Name: NF7890_high_7
Description: NF7890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7890_high_7
NF7890_high_7
[»] chr8 (19 HSPs)
chr8 (1-246)||(2517108-2517353)
chr8 (168-244)||(1459092-1459169)
chr8 (168-244)||(2428799-2428876)
chr8 (166-244)||(2512912-2512991)
chr8 (164-244)||(2506297-2506378)
chr8 (188-246)||(2431774-2431832)
chr8 (8-70)||(10170375-10170437)
chr8 (5-51)||(34259803-34259849)
chr8 (189-226)||(2497596-2497633)
chr8 (6-39)||(25799154-25799187)
chr8 (1-41)||(1979413-1979453)
chr8 (190-246)||(2435164-2435220)
chr8 (1-41)||(3066043-3066083)
chr8 (5-39)||(16824392-16824426)
chr8 (3-37)||(31551857-31551891)
chr8 (9-51)||(43534933-43534975)
chr8 (6-39)||(25488801-25488834)
chr8 (5-41)||(28144067-28144103)
chr8 (5-41)||(29096951-29096987)
[»] chr7 (6 HSPs)
chr7 (210-246)||(946123-946159)
chr7 (1-41)||(28266475-28266515)
chr7 (1-36)||(31020714-31020749)
chr7 (6-38)||(7139462-7139494)
chr7 (7-35)||(13859528-13859556)
chr7 (1-37)||(40826516-40826552)
[»] chr6 (8 HSPs)
chr6 (1-41)||(34625735-34625775)
chr6 (1-41)||(34598539-34598579)
chr6 (8-38)||(6294557-6294587)
chr6 (1-35)||(14244051-14244085)
chr6 (3-41)||(32577482-32577520)
chr6 (4-41)||(4945264-4945301)
chr6 (9-41)||(7564182-7564214)
chr6 (1-41)||(30781416-30781456)
[»] chr4 (9 HSPs)
chr4 (1-41)||(32369930-32369970)
chr4 (10-52)||(18783987-18784029)
chr4 (1-52)||(3458172-3458223)
chr4 (2-41)||(31277042-31277081)
chr4 (8-37)||(2796554-2796583)
chr4 (1-42)||(12441788-12441829)
chr4 (5-42)||(26369447-26369484)
chr4 (1-41)||(843159-843199)
chr4 (5-41)||(12710008-12710044)
[»] chr3 (11 HSPs)
chr3 (6-41)||(49636844-49636879)
chr3 (20-94)||(7513338-7513410)
chr3 (1-51)||(28576717-28576767)
chr3 (8-41)||(18268023-18268056)
chr3 (6-51)||(21768612-21768657)
chr3 (6-47)||(55053787-55053828)
chr3 (6-46)||(31207845-31207885)
chr3 (1-41)||(32166201-32166241)
chr3 (5-41)||(36301998-36302034)
chr3 (7-51)||(41036776-41036820)
chr3 (1-41)||(47542536-47542576)
[»] chr1 (7 HSPs)
chr1 (5-48)||(26698193-26698236)
chr1 (1-41)||(29230066-29230106)
chr1 (20-94)||(38594210-38594284)
chr1 (7-41)||(48317604-48317638)
chr1 (7-40)||(4769327-4769360)
chr1 (1-38)||(6440870-6440907)
chr1 (1-41)||(1118414-1118454)
[»] chr5 (4 HSPs)
chr5 (10-104)||(28322251-28322351)
chr5 (192-241)||(6742652-6742701)
chr5 (8-41)||(9878050-9878083)
chr5 (7-52)||(39828473-39828518)
[»] chr2 (13 HSPs)
chr2 (1-46)||(11781576-11781621)
chr2 (1-41)||(14268751-14268791)
chr2 (2-41)||(13252319-13252358)
chr2 (1-42)||(6736491-6736532)
chr2 (4-41)||(28341328-28341365)
chr2 (8-65)||(30563417-30563474)
chr2 (1-53)||(31095144-31095197)
chr2 (1-41)||(34687007-34687048)
chr2 (1-41)||(34709419-34709460)
chr2 (6-51)||(39459790-39459835)
chr2 (1-41)||(8765419-8765459)
chr2 (9-41)||(17427327-17427359)
chr2 (1-41)||(42043215-42043255)
[»] scaffold0147 (1 HSPs)
scaffold0147 (1-52)||(37670-37721)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 2517108 - 2517353
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgttatgttggtgtcagataccagacatgcctttgatcagaagtgtgggtgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2517108 acaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgttatgttggtgtcagataccagacatgcctttgatcagaagtgtgggtgc 2517207  T
101 tagagaattcaaaacagtctaacttaaaaaccagaatattcatcgtttatgcaggaggcatatgcacatataacaacataatcagataaataccttctct 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2517208 tagagaattcaaaacagtataacttaaaaaccagaatattcatcgtttatgcaggaggcatatgcacatataacaacataatcagataaataccttctct 2517307  T
201 ttacttccagcacttccaacaacatagcaaccatgcaatttagcaa 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
2517308 ttacttccagcacttccaacaacatagcaaccatgcaatttagcaa 2517353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 1459169 - 1459092
Alignment:
168 atataacaaca-taatcagataaataccttctctttacttccagcacttccaacaacatagcaaccatgcaatttagc 244  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
1459169 atataacaacaataatcagacaaataccttctctttacttccagcacttccaacgacatagcaaccatgcaatttagc 1459092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 2428876 - 2428799
Alignment:
168 atataacaaca-taatcagataaataccttctctttacttccagcacttccaacaacatagcaaccatgcaatttagc 244  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
2428876 atataacaacaataatcagacaaataccttctctttacttccagcacttccaacgacatagcaaccatgcaatttagc 2428799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 2512912 - 2512991
Alignment:
166 acatataacaaca-taatcagataaataccttctctttacttccagcacttccaacaacatagcaaccatgcaatttagc 244  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
2512912 acatgtaacaacaataattagataaataccttctctttacttccagcacttccaacgacatagcaaccatgcaatttagc 2512991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 2506297 - 2506378
Alignment:
164 gcacatataacaacat-aatcagataaataccttctctttacttccagcacttccaacaacatagcaaccatgcaatttagc 244  Q
    |||||||||||||||  ||||||| | ||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
2506297 gcacatataacaacaacaatcagacatataccttctctttacttccagcacttccaacgacttagcaaccatgcaatttagc 2506378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 2431832 - 2431774
Alignment:
188 aaataccttctctttacttccagcacttccaacaacatagcaaccatgcaatttagcaa 246  Q
    ||||||||| |||||| |||||||||||||||||||||| |||||||||||||| ||||    
2431832 aaataccttttctttagttccagcacttccaacaacataacaaccatgcaattttgcaa 2431774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 10170437 - 10170375
Alignment:
8 taataatttgagaaaatgaattaattgaatgtaactacacgtgttatgttggtgtcagatacc 70  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||| |||||||||| ||||||    
10170437 taataatttgagaaaataaattaattgaatgtaactacatgggttgtgttggtgtctgatacc 10170375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 34259849 - 34259803
Alignment:
5 cggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 51  Q
    ||||||||||||||||||||||| ||||||||| |||||| ||||||    
34259849 cggtaataatttgagaaaatgaaataattgaatataactagacgtgt 34259803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 2497596 - 2497633
Alignment:
189 aataccttctctttacttccagcacttccaacaacata 226  Q
    ||||||||||||||||||||||||||||| ||||||||    
2497596 aataccttctctttacttccagcacttcctacaacata 2497633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 25799154 - 25799187
Alignment:
6 ggtaataatttgagaaaatgaattaattgaatgt 39  Q
    ||||||||||||||||||||||||||||||||||    
25799154 ggtaataatttgagaaaatgaattaattgaatgt 25799187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1979413 - 1979453
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||||||||||||||||||||||| |||||||| |||||||    
1979413 acaccggtaataatttgagaaaattaattaattaaatgtaa 1979453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 2435220 - 2435164
Alignment:
190 ataccttctctttacttccagcacttccaacaacatagcaaccatgcaatttagcaa 246  Q
    ||||||| |||||  |||||||||||||||||||||| |||||||||| ||| ||||    
2435220 ataccttttcttttgttccagcacttccaacaacataacaaccatgcagttttgcaa 2435164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3066043 - 3066083
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||| |||||||||||||||||||| |||||||||||||||    
3066043 acacaggtaataatttgagaaaatggattaattgaatgtaa 3066083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 16824392 - 16824426
Alignment:
5 cggtaataatttgagaaaatgaattaattgaatgt 39  Q
    |||||||||||||||||||||||||| ||||||||    
16824392 cggtaataatttgagaaaatgaattatttgaatgt 16824426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 31551891 - 31551857
Alignment:
3 accggtaataatttgagaaaatgaattaattgaat 37  Q
    |||||||||||||||||||||||||| ||||||||    
31551891 accggtaataatttgagaaaatgaataaattgaat 31551857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 43534933 - 43534975
Alignment:
9 aataatttgagaaaatgaattaattgaatgtaactacacgtgt 51  Q
    ||||||||||||||||||| || ||||||||||||||| ||||    
43534933 aataatttgagaaaatgaaatatttgaatgtaactacatgtgt 43534975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 25488801 - 25488834
Alignment:
6 ggtaataatttgagaaaatgaattaattgaatgt 39  Q
    |||| |||||||||||||||||||||||||||||    
25488801 ggtattaatttgagaaaatgaattaattgaatgt 25488834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 28144103 - 28144067
Alignment:
5 cggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||||||||||||||||||| ||||||| ||||||||    
28144103 cggtaataatttgagaaaatcaattaatagaatgtaa 28144067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 29096951 - 29096987
Alignment:
5 cggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||||||||||| ||||||| ||||||||||||||||    
29096951 cggtaataatttaagaaaataaattaattgaatgtaa 29096987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 946123 - 946159
Alignment:
210 gcacttccaacaacatagcaaccatgcaatttagcaa 246  Q
    |||||||||||||||||||||||||||||||||||||    
946123 gcacttccaacaacatagcaaccatgcaatttagcaa 946159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28266475 - 28266515
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
28266475 acaccggtaataatttgagaaaataaattaattggatgtaa 28266515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31020749 - 31020714
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaa 36  Q
    |||||||||| |||||||||||||||||||||||||    
31020749 acaccggtaacaatttgagaaaatgaattaattgaa 31020714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 7139494 - 7139462
Alignment:
6 ggtaataatttgagaaaatgaattaattgaatg 38  Q
    ||||||| |||||||||||||||||||||||||    
7139494 ggtaatattttgagaaaatgaattaattgaatg 7139462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 13859528 - 13859556
Alignment:
7 gtaataatttgagaaaatgaattaattga 35  Q
    |||||||||||||||||||||||||||||    
13859528 gtaataatttgagaaaatgaattaattga 13859556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40826516 - 40826552
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaat 37  Q
    |||| ||| ||||||||||||||||||||||||||||    
40826516 acactggtgataatttgagaaaatgaattaattgaat 40826552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34625735 - 34625775
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||||| ||||||||||||||||||||||||||||||||||    
34625735 acaccgataataatttgagaaaatgaattaattgaatgtaa 34625775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34598539 - 34598579
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||||| ||||||||||||||||||||||||||| ||||||    
34598539 acaccgataataatttgagaaaatgaattaattggatgtaa 34598579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 6294587 - 6294557
Alignment:
8 taataatttgagaaaatgaattaattgaatg 38  Q
    |||||||||||||||||||||||||||||||    
6294587 taataatttgagaaaatgaattaattgaatg 6294557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 14244085 - 14244051
Alignment:
1 acaccggtaataatttgagaaaatgaattaattga 35  Q
    ||||||||| |||||||||||||||||||||||||    
14244085 acaccggtagtaatttgagaaaatgaattaattga 14244051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 32577520 - 32577482
Alignment:
3 accggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||||| || |||||||||||||||||||||||||||||    
32577520 accggtgatgatttgagaaaatgaattaattgaatgtaa 32577482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 4945264 - 4945301
Alignment:
4 ccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    ||||||||  ||||||||||||||||||||||||||||    
4945264 ccggtaattgtttgagaaaatgaattaattgaatgtaa 4945301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 7564214 - 7564182
Alignment:
9 aataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||||||||||||||| ||||||||||||||||    
7564214 aataatttgagaaaataaattaattgaatgtaa 7564182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30781456 - 30781416
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    ||||||||| |||||||| |||||||||||| |||||||||    
30781456 acaccggtactaatttgataaaatgaattaactgaatgtaa 30781416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32369970 - 32369930
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||||| ||||||||||||||||||||||||||||||||||    
32369970 acaccgataataatttgagaaaatgaattaattgaatgtaa 32369930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 18783987 - 18784029
Alignment:
10 ataatttgagaaaatgaattaattgaatgtaactacacgtgtt 52  Q
    |||||||||||||||||| ||||||||||||| ||||||||||    
18783987 ataatttgagaaaatgaagtaattgaatgtaattacacgtgtt 18784029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3458223 - 3458172
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgtt 52  Q
    ||||||||||||| | ||||||||||| ||||||||||||| || |||||||    
3458223 acaccggtaataaatggagaaaatgaaataattgaatgtaattatacgtgtt 3458172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 31277081 - 31277042
Alignment:
2 caccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    ||||| |||||||||||||||||||| |||||||||||||    
31277081 caccgataataatttgagaaaatgaactaattgaatgtaa 31277042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 2796554 - 2796583
Alignment:
8 taataatttgagaaaatgaattaattgaat 37  Q
    ||||||||||||||||||||||||||||||    
2796554 taataatttgagaaaatgaattaattgaat 2796583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12441829 - 12441788
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaac 42  Q
    |||||||||||| ||||||||||||||| |||||||| ||||    
12441829 acaccggtaatactttgagaaaatgaatcaattgaatctaac 12441788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 26369484 - 26369447
Alignment:
5 cggtaataatttgagaaaatgaattaattgaatgtaac 42  Q
    ||||| |||||||||||||||||||| |||||||||||    
26369484 cggtagtaatttgagaaaatgaattatttgaatgtaac 26369447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 843199 - 843159
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||| ||||||||||||||||||||||||| ||||| ||||    
843199 acactggtaataatttgagaaaatgaattatttgaacgtaa 843159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 12710008 - 12710044
Alignment:
5 cggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||||||||||||||||||| ||||||||||| ||||    
12710008 cggtaataatttgagaaaataaattaattgaacgtaa 12710044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 49636879 - 49636844
Alignment:
6 ggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    ||||||||||||||||||||||||||||||||||||    
49636879 ggtaataatttgagaaaatgaattaattgaatgtaa 49636844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 7513410 - 7513338
Alignment:
20 aaaatgaattaattgaatgtaactacacgtgttatgttggtgtcagataccagacatgcctttgatcagaagtgt 94  Q
    |||||||||| ||||||||||| ||||  |||| ||||||||| ||| |||||| | | ||||||||||||||||    
7513410 aaaatgaatttattgaatgtaattaca--tgttgtgttggtgttagacaccagatacggctttgatcagaagtgt 7513338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 28576717 - 28576767
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 51  Q
    ||||||||||||||||||||||||||   |||||||||||| |||| ||||    
28576717 acaccggtaataatttgagaaaatgacaaaattgaatgtaattacatgtgt 28576767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 18268056 - 18268023
Alignment:
8 taataatttgagaaaatgaattaattgaatgtaa 41  Q
    ||||||||||||||||||||||||||||| ||||    
18268056 taataatttgagaaaatgaattaattgaacgtaa 18268023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 21768612 - 21768657
Alignment:
6 ggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 51  Q
    ||||||||||||||||||||||||| ||||| ||||| ||| ||||    
21768612 ggtaataatttgagaaaatgaattatttgaacgtaaccacatgtgt 21768657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 55053787 - 55053828
Alignment:
6 ggtaataatttgagaaaatgaattaattgaatgtaactacac 47  Q
    ||||||||||| |||||||||||||  |||||||||||||||    
55053787 ggtaataatttaagaaaatgaattatatgaatgtaactacac 55053828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 31207845 - 31207885
Alignment:
6 ggtaataatttgagaaaatgaattaattgaatgtaactaca 46  Q
    |||||| ||||||||||||||  ||||||||||||||||||    
31207845 ggtaattatttgagaaaatgacataattgaatgtaactaca 31207885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32166241 - 32166201
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||| |||||||||||||||||||||  |||||||||||||    
32166241 acactggtaataatttgagaaaatgacataattgaatgtaa 32166201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 36301998 - 36302034
Alignment:
5 cggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||||||||| ||||||||| ||||||||||||||||    
36301998 cggtaataatgtgagaaaataaattaattgaatgtaa 36302034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 41036820 - 41036776
Alignment:
7 gtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 51  Q
    ||||||||||||||||||||  || ||||||||||| ||||||||    
41036820 gtaataatttgagaaaatgatatagttgaatgtaaccacacgtgt 41036776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 47542536 - 47542576
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||| |||||||||||||||||||||| || ||||||||||    
47542536 acactggtaataatttgagaaaatgaactatttgaatgtaa 47542576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 26698236 - 26698193
Alignment:
5 cggtaataatttgagaaaatgaattaattgaatgtaactacacg 48  Q
    |||||||||| |||||||||||||||||||||||||| ||||||    
26698236 cggtaataatctgagaaaatgaattaattgaatgtaattacacg 26698193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29230066 - 29230106
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    ||||||||||||||||||||||||||  |||||||||||||    
29230066 acaccggtaataatttgagaaaatgacataattgaatgtaa 29230106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 38594210 - 38594284
Alignment:
20 aaaatgaattaattgaatgtaactacacgtgttatgttggtgtcagataccagacatgcctttgatcagaagtgt 94  Q
    |||||||||||||||||  |||  ||  ||||| ||||||||||||| |||| ||| |||||| |||||||||||    
38594210 aaaatgaattaattgaacataatcacgtgtgttgtgttggtgtcagacaccacacacgcctttcatcagaagtgt 38594284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 48317604 - 48317638
Alignment:
7 gtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    ||||||||||||||||||||| |||||||||||||    
48317604 gtaataatttgagaaaatgaaataattgaatgtaa 48317638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 4769360 - 4769327
Alignment:
7 gtaataatttgagaaaatgaattaattgaatgta 40  Q
    |||||||||||||||||||| |||||||||||||    
4769360 gtaataatttgagaaaatgagttaattgaatgta 4769327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6440907 - 6440870
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatg 38  Q
    |||| |||||||||||||||||||||||| ||||||||    
6440907 acactggtaataatttgagaaaatgaatttattgaatg 6440870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1118454 - 1118414
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||| ||| ||||||||| ||||||||||||||||||||||    
1118454 acacgggtgataatttgaaaaaatgaattaattgaatgtaa 1118414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 28322251 - 28322351
Alignment:
10 ataatttgagaaaatgaattaattgaatgtaactacacgtgtt------atgttggtgtcagataccagacatgcctttgatcagaagtgtgggtgctag 103  Q
    ||||||||||||||||||||||||||||||||  ||| |||||       ||| | |||| |||||  |||||||||| |||||||||||| ||||||||    
28322251 ataatttgagaaaatgaattaattgaatgtaatcacatgtgttggtgtagtgtcgatgtcggatactggacatgccttcgatcagaagtgtcggtgctag 28322350  T
104 a 104  Q
    |    
28322351 a 28322351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 6742652 - 6742701
Alignment:
192 accttctctttacttccagcacttccaacaacatagcaaccatgcaattt 241  Q
    ||||| |||||| ||||||||||||||||||||||  ||||| |||||||    
6742652 accttttctttagttccagcacttccaacaacataaaaaccacgcaattt 6742701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 9878083 - 9878050
Alignment:
8 taataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||||||||||||| |||||||||||||||||||    
9878083 taataatttgagaatatgaattaattgaatgtaa 9878050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 39828473 - 39828518
Alignment:
7 gtaataatttgagaaaatgaattaattgaatgtaactacacgtgtt 52  Q
    ||||||||||||||| ||||| |||||||||||||| ||| |||||    
39828473 gtaataatttgagaatatgaaataattgaatgtaaccacatgtgtt 39828518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11781621 - 11781576
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaactaca 46  Q
    ||||| ||||||||||||||||||||| || |||||||||||||||    
11781621 acaccagtaataatttgagaaaatgaaatatttgaatgtaactaca 11781576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14268791 - 14268751
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
14268791 acaccggtaataatttgagaaaatgacttaattgaacgtaa 14268751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 13252358 - 13252319
Alignment:
2 caccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
13252358 caccggtaataatgtgagaaaatgaattagttgaatgtaa 13252319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6736491 - 6736532
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaac 42  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    
6736491 acaccggtaataatttgagaatatggaataattgaatgtaac 6736532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 28341328 - 28341365
Alignment:
4 ccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    ||||||||| |||||||||||||||||||| |||||||    
28341328 ccggtaatagtttgagaaaatgaattaattaaatgtaa 28341365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 30563417 - 30563474
Alignment:
8 taataatttgagaaaatgaattaattgaatgtaactacacgtgttatgttggtgtcag 65  Q
    |||||||||||||||||||  ||||| |||||||||| | ||||| ||| ||||||||    
30563417 taataatttgagaaaatgacataattcaatgtaactataggtgttgtgtcggtgtcag 30563474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31095144 - 31095197
Alignment:
1 acaccggtaataatttgagaaaat-gaattaattgaatgtaactacacgtgtta 53  Q
    |||| ||||||||||||||||||| ||| ||||||||| |||||||| ||||||    
31095144 acactggtaataatttgagaaaatggaagtaattgaatataactacatgtgtta 31095197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34687007 - 34687048
Alignment:
1 acaccggtaataatttgagaaaatga-attaattgaatgtaa 41  Q
    |||||||||||||||||||||||||| |||||||||| ||||    
34687007 acaccggtaataatttgagaaaatgatattaattgaaagtaa 34687048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34709419 - 34709460
Alignment:
1 acaccggtaataatttgagaaaatga-attaattgaatgtaa 41  Q
    |||||||||||||||||||||||||| |||||||||| ||||    
34709419 acaccggtaataatttgagaaaatgatattaattgaaagtaa 34709460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 39459790 - 39459835
Alignment:
6 ggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 51  Q
    ||||||||||| || |||||||||||||||||||||  ||||||||    
39459790 ggtaataatttaaggaaatgaattaattgaatgtaatcacacgtgt 39459835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 8765459 - 8765419
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||||||| ||||||| |||||| |||||||||||||||||    
8765459 acaccggtgataatttaagaaaacgaattaattgaatgtaa 8765419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 17427359 - 17427327
Alignment:
9 aataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||||||||||||||||||||||||||| ||||    
17427359 aataatttgagaaaatgaattaattgaaggtaa 17427327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42043255 - 42043215
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaa 41  Q
    |||||| ||||||||| | ||||||||||||||||||||||    
42043255 acaccgataataatttaataaaatgaattaattgaatgtaa 42043215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 37721 - 37670
Alignment:
1 acaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgtt 52  Q
    ||||||||||||| | ||||||||||| ||||||||||||| || |||||||    
37721 acaccggtaataaatggagaaaatgaaataattgaatgtaattatacgtgtt 37670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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