View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7890_low_1 (Length: 570)
Name: NF7890_low_1
Description: NF7890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7890_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 55 - 551
Target Start/End: Complemental strand, 2755664 - 2755167
Alignment:
| Q |
55 |
catcagaaatcatttttcaagcaattttatggatctgtgacaaagttggactatgtgacattaaggcttggtttcattaaggtaagattttagtgtgcat |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2755664 |
catcagaaatcatttttcaagcaattttatggatctgtgacaaagttggactatgtgacattaaggcttggtttcattaaggtaagattttagtgtgcat |
2755565 |
T |
|
| Q |
155 |
atcttgccattattatatatgattgaatcatattattaattctgtttatctgttttagactcattgtaggggaaatccgaagtttaattttcacaagtac |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2755564 |
atcttgccattattatatatgattgaatcatattattaattctgtttat-tgttttagactcattgtaggggaaatccgaagtttaattttcacaagtac |
2755466 |
T |
|
| Q |
255 |
atgaaccgtgcgcttgaagatgatttcaagaaagttgtcggtattaggtatgcgcttctatcaagtttctatatttactacaatcttcatcagtaattta |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2755465 |
atgaaccgtgcgcttgaagatgatttcaagaaagttgtcggtattaggtatgcgcttctatcaagtttctatatttactacaatcttcatcagtaattta |
2755366 |
T |
|
| Q |
355 |
ttggccaaattttctttgttcagcctatagtgtaaagttatgtattctttgttgtcactaattcaccattttattttaatggttgcagttggtatctttg |
454 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2755365 |
ttggccaaattttctttgttcagcctatagtgtaaagttatgtattctttgttgtcattaattcaccattttattttaatggttgcagttggtatctttg |
2755266 |
T |
|
| Q |
455 |
gatctttgtggtcatatttttgttgcttaatgtcaatggtatgcttccagacttggtacttttgttc--tgtctcaacttaattacctatattttctac |
551 |
Q |
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| T |
2755265 |
gatctttgtggtcatatttttgttgcttaatgtcaatggtatgcttccagacttggtacttttgttctttgtctcaactcaattacctatattttctac |
2755167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 57 - 497
Target Start/End: Complemental strand, 2747613 - 2747164
Alignment:
| Q |
57 |
tcagaaatcatttttcaagcaattttatggatctgtgacaaagttggactatgtgacattaaggcttggtttcattaaggtaagattttagtgtgca-ta |
155 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |||||||| | ||| || |
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| T |
2747613 |
tcagaaatcatttttcaagcaattttatggatcagtgacaaagttggattatgtgacattaaggcgtggtttcattatggtaagatatgtatgttatgta |
2747514 |
T |
|
| Q |
156 |
tcttgccattattatatatgattgaatcatattattaattctgtttatctgttttagactcattgtaggggaaatccgaagtttaattttcacaagtaca |
255 |
Q |
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| |||| ||||| ||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2747513 |
t-ttgcaattat-atatatgattgaaccatattattaattttgtttttctattttagactcattgtaggggaaatccaaagtttaattttcacaagtaca |
2747416 |
T |
|
| Q |
256 |
tgaaccgtgcgcttgaagatgatttcaagaaagttgtcggtattaggtatgcgcttctatcaagtttctatatttactacaatcttcat----------c |
345 |
Q |
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||| |||||| ||||||||||| ||| | || ||||| ||||||||||||| | | | ||||||||||| || | ||||||||| | |
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| T |
2747415 |
tgatccgtgcacttgaagatgacttccaaaacgttgttggtattaggtatgtggatatgcaaagtttctataactatcaaaatcttcatcaatcataagc |
2747316 |
T |
|
| Q |
346 |
agtaatttattggccaaattttctttgttcagcctatagtgtaaagttatgtattctttgttgtcactaattcaccattttattttaatggttgcagttg |
445 |
Q |
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| |||| | ||||||||||||||||| || | |||| ||||| ||| | ||||| | |||||||||| ||||||||||||||||||||||||||||| |
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| T |
2747315 |
aataataagtaggccaaattttctttgtgcaacttatattgtaatgttgttgattctctcttgtcactaactcaccattttattttaatggttgcagttg |
2747216 |
T |
|
| Q |
446 |
gtatctttggatctttgtggtcatatttttgttgcttaatgtcaatggtatg |
497 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
2747215 |
gtatctttggatctttgtggtcatatttatgttgcttaatatcaatggtatg |
2747164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 6e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 57 - 225
Target Start/End: Complemental strand, 2372928 - 2372760
Alignment:
| Q |
57 |
tcagaaatcatttttcaagcaattttatggatctgtgacaaagttggactatgtgacattaaggcttggtttcattaaggtaagattttagtgtgcatat |
156 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2372928 |
tcagaaataaattttcaagcaattttatggatctatgacaaagttggactatatggcattaaggcttggtttcattaaggtaagattttagtgtgcatat |
2372829 |
T |
|
| Q |
157 |
cttgccattattatatatgattgaatcatattattaattctgtttatctgttttagactcattgtaggg |
225 |
Q |
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||||||| |||||| ||| ||||||||||||||||||| || || ||| | ||||||||||||||||| |
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| T |
2372828 |
cttgccaatattatctattattgaatcatattattaatgatgattctctatattagactcattgtaggg |
2372760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 326
Target Start/End: Original strand, 34227365 - 34227446
Alignment:
| Q |
249 |
aagtacatgaaccgtgcgcttgaagatgatt----tcaagaaagttgtcggtattaggtatgcgcttctatcaagtttctat |
326 |
Q |
| |
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|||||||||||| |||| ||||||||||| | ||||||||||||| ||||| |||||| |||||| ||||| |||||| |
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| T |
34227365 |
aagtacatgaactgtgcacttgaagatgaatgatatcaagaaagttgttggtataaggtatctgcttctgtcaagcttctat |
34227446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 426 - 500
Target Start/End: Original strand, 55322485 - 55322559
Alignment:
| Q |
426 |
tattttaatggttgcagttggtatctttggatctttgtggtcatatttttgttgcttaatgtcaatggtatgctt |
500 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||||||||||| || |||||| | ||| |||||||||||||| |
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| T |
55322485 |
tattttcatggttgcagttggtatctttggctctttgtggtcatcttcttgttgttaaatatcaatggtatgctt |
55322559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 55322262 - 55322323
Alignment:
| Q |
234 |
aagtttaattttcacaagtacatgaaccgtgcgcttgaagatgatttcaagaaagttgtcgg |
295 |
Q |
| |
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||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| |
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| T |
55322262 |
aagtttaattttcacaagtacatgattcgtgcccttgaagatgatttcaagcaagttgtcgg |
55322323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 55322045 - 55322128
Alignment:
| Q |
57 |
tcagaaatcatttttcaagcaattttatggatctgtgacaaagttggactatgtgacattaaggcttggtttcattaaggtaag |
140 |
Q |
| |
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|||| |||| |||||||||||||||||||| ||||||||||| | || ||||| |||||||| ||||||||||||| |||||| |
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| T |
55322045 |
tcagcaatcctttttcaagcaattttatggctctgtgacaaaatcagattatgtcacattaagacttggtttcattacggtaag |
55322128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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