View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7890_low_10 (Length: 262)

Name: NF7890_low_10
Description: NF7890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7890_low_10
NF7890_low_10
[»] chr5 (6 HSPs)
chr5 (100-187)||(4287571-4287658)
chr5 (1-74)||(41709578-41709651)
chr5 (187-245)||(4291072-4291130)
chr5 (1-74)||(8123606-8123679)
chr5 (5-73)||(10321869-10321937)
chr5 (36-73)||(24108811-24108848)
[»] chr7 (5 HSPs)
chr7 (1-73)||(30452775-30452847)
chr7 (1-73)||(30456384-30456456)
chr7 (1-73)||(42513062-42513134)
chr7 (1-63)||(11206549-11206611)
chr7 (1-62)||(49017205-49017266)
[»] chr3 (5 HSPs)
chr3 (1-73)||(36326568-36326640)
chr3 (5-63)||(14029409-14029467)
chr3 (29-73)||(30912141-30912185)
chr3 (200-234)||(21224810-21224844)
chr3 (17-59)||(32414847-32414889)
[»] chr6 (6 HSPs)
chr6 (1-75)||(4834797-4834871)
chr6 (1-73)||(13886619-13886691)
chr6 (1-73)||(7415717-7415789)
chr6 (1-73)||(7422725-7422797)
chr6 (1-73)||(7426664-7426736)
chr6 (17-73)||(33242942-33242998)
[»] chr1 (2 HSPs)
chr1 (1-73)||(23405475-23405547)
chr1 (5-73)||(21075941-21076009)
[»] chr8 (2 HSPs)
chr8 (1-73)||(44762045-44762117)
chr8 (1-73)||(44765352-44765424)
[»] chr4 (2 HSPs)
chr4 (15-73)||(27387712-27387770)
chr4 (5-73)||(55322334-55322402)
[»] chr2 (2 HSPs)
chr2 (1-73)||(31211891-31211963)
chr2 (36-73)||(40400909-40400946)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 4287571 - 4287658
Alignment:
Q  100 cttgctccctaaaactatattcttctgttttgtcatctctctgtgctgactatcgattactcataccctagtaatataggccttggtc 187  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4287571 cttgctccctaaaactaaattcttctgttttgtcatctctctgtgctgactatcgattactcataccctagtaatataggccttggtc 4287658  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 41709578 - 41709651
Alignment:
Q  1 ttttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatcaa 74  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||  |||||||||    
T  41709578 ttttctttctcttttctatagtttctccctctaaattctggagtgtgatctctactcgaattgggtcgtatcaa 41709651  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 4291072 - 4291130
Alignment:
Q  187 caggatttaattttttatttctattgtttttctacaattgggttgcagggttaattttc 245  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  4291072 caggatttaattttttagttctattgtttttctacaattgggttgcagggttatttttc 4291130  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8123606 - 8123679
Alignment:
Q  1 ttttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatcaa 74  Q
    ||||||||||||||||| || ||||||||||| | ||||| |||||||||| |||||||||||  |||||||||    
T  8123606 ttttctttctcttttctttaatttctccctctaatttctgaagtgtgatccatactcgaattgggtcgtatcaa 8123679  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 10321937 - 10321869
Alignment:
Q  5 ctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    ||||||||| ||||||| || || |||| |||| ||||||||||||||||||| |||||  ||||||||    
T  10321937 ctttctcttatctctagcttatctctctaaattatggagtgtgatccctactcaaattgggtcgtatca 10321869  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 24108811 - 24108848
Alignment:
Q  36 ttctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  24108811 ttctggagtgtgatccctactcgaattgggtcgtatca 24108848  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 30452775 - 30452847
Alignment:
Q  1 ttttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  30452775 ttttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 30452847  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 30456384 - 30456456
Alignment:
Q  1 ttttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  30456384 ttttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 30456456  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 42513134 - 42513062
Alignment:
Q  1 ttttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||  ||||||||    
T  42513134 ttttctttctcttttctctagtttctccctctaatttctggagtgtgatccctactcgaattgggtcgtatca 42513062  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11206549 - 11206611
Alignment:
Q  1 ttttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattg 63  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  11206549 ttttctttctcttttctctagtttctccctctaaattctggagtgtgatctctactcgaattg 11206611  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 49017205 - 49017266
Alignment:
Q  1 ttttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaatt 62  Q
    |||||||||| || ||||||||||||| |||| | || |||||||||||||||| |||||||    
T  49017205 ttttctttcttttatctctagtttctctctctaatttatggagtgtgatccctattcgaatt 49017266  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36326568 - 36326640
Alignment:
Q  1 ttttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  36326568 ttttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 36326640  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 14029409 - 14029467
Alignment:
Q  5 ctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattg 63  Q
    |||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  14029409 ctttcttttatctctagtttctcactctaaattctggagtgtgatccctactcgaattg 14029467  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 30912141 - 30912185
Alignment:
Q  29 ctctgaattctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    |||| |||||||||||||||||| |||||||||||| ||||||||    
T  30912141 ctctaaattctggagtgtgatccgtactcgaattgagtcgtatca 30912185  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 21224810 - 21224844
Alignment:
Q  200 tttatttctattgtttttctacaattgggttgcag 234  Q
    ||||||| |||||||||||||||||||||||||||    
T  21224810 tttatttttattgtttttctacaattgggttgcag 21224844  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 32414847 - 32414889
Alignment:
Q  17 tctagtttctccctctgaattctggagtgtgatccctactcga 59  Q
    ||||||||||| |||| |||| |||||||||||||||||||||    
T  32414847 tctagtttctctctctaaattttggagtgtgatccctactcga 32414889  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4834797 - 4834871
Alignment:
Q  1 ttttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatcaac 75  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||  ||||||||||    
T  4834797 ttttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcaaattgggtcgtatcaac 4834871  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13886619 - 13886691
Alignment:
Q  1 ttttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||  ||||||||    
T  13886619 ttttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcaaattgggtcgtatca 13886691  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 7415717 - 7415789
Alignment:
Q  1 ttttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    ||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| | ||| |||||||||    
T  7415717 ttttctttctcttttctctagtttctctctctaatttctggagtgtgatccctactcaagttggatcgtatca 7415789  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 7422725 - 7422797
Alignment:
Q  1 ttttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    ||||||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||  ||||||||    
T  7422725 ttttctttctcttttctctagtttctctctctaatttcttgagtgtgatccctactcgaattgggtcgtatca 7422797  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 7426664 - 7426736
Alignment:
Q  1 ttttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    |||||||||||||||||||| ||||||  ||| | ||||||||||||||||||||||||||||  ||||||||    
T  7426664 ttttctttctcttttctctaatttctctttctaatttctggagtgtgatccctactcgaattgggtcgtatca 7426736  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 33242942 - 33242998
Alignment:
Q  17 tctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    ||||||||||| |||| | ||||||||||||||| ||||||||||||  ||||||||    
T  33242942 tctagtttctctctctaatttctggagtgtgatctctactcgaattgggtcgtatca 33242998  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 23405547 - 23405475
Alignment:
Q  1 ttttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||    
T  23405547 ttttctttctcttttctctagtttctccctctaaattctggagtgtgatccctacttgaattgggtcgtatca 23405475  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 21076009 - 21075941
Alignment:
Q  5 ctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    |||||| || ||| ||||||||| | || ||||||||||||| |||||||||||||||  |||||||||    
T  21076009 ctttcttttatctgtagtttctctcgctaaattctggagtgtcatccctactcgaatttgatcgtatca 21075941  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 44762045 - 44762117
Alignment:
Q  1 ttttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    |||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  44762045 ttttttttctcttttctatagtttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 44762117  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 44765352 - 44765424
Alignment:
Q  1 ttttctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||  ||||||||    
T  44765352 ttttctttctcttttctatagtttctccctctaaattctggagtgtaatccctactcgaattgggtcgtatca 44765424  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 27387712 - 27387770
Alignment:
Q  15 tctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  27387712 tctctagtttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 27387770  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 55322402 - 55322334
Alignment:
Q  5 ctttctcttttctctagtttctccctctgaattctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    |||||| || ||||||| |||| | ||| ||||||||||||||||||||||||||||||  ||||||||    
T  55322402 ctttcttttatctctagcttctacttctaaattctggagtgtgatccctactcgaattgggtcgtatca 55322334  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31211891 - 31211963
Alignment:
Q  1 ttttctttctcttttctctagtttctccctctgaatt-ctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    |||||||||| || |||||||||| || |||| |||| |||||||||||||||||||||||||| |||||||||    
T  31211891 ttttctttcttttatctctagttt-tctctcttaatttctggagtgtgatccctactcgaattggatcgtatca 31211963  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 40400946 - 40400909
Alignment:
Q  36 ttctggagtgtgatccctactcgaattgaatcgtatca 73  Q
    ||||||||||||||||||||||||||||| || |||||    
T  40400946 ttctggagtgtgatccctactcgaattgagtcatatca 40400909  T

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