View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7890_low_15 (Length: 242)

Name: NF7890_low_15
Description: NF7890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7890_low_15
NF7890_low_15
[»] chr7 (1 HSPs)
chr7 (18-222)||(23865738-23865941)
[»] chr3 (7 HSPs)
chr3 (131-222)||(23359300-23359392)
chr3 (131-222)||(23364121-23364213)
chr3 (131-222)||(23694599-23694691)
chr3 (131-222)||(23713039-23713131)
chr3 (131-222)||(23731495-23731587)
chr3 (131-222)||(23749950-23750042)
chr3 (40-80)||(47510735-47510775)
[»] chr4 (1 HSPs)
chr4 (18-83)||(54335236-54335301)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 23865941 - 23865738
Alignment:
Q  18 ataaggagaataataataaatgcctttgggacatttattaaagtactaaaataagtaggtttgcatnnnnnnngttggtttttatgttctgagaaacttt 117  Q
    |||||||||||  |||| ||||||||||| ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  23865941 ataaggagaatgctaatgaatgcctttggaacatttattaaagtactaaaataagtaggtttgcataaaaaa-gttggtttttatgttctgagaaacttt 23865843  T
Q  118 ggactggcaggtgtggttgggtatggtttagtctgttcgccgattgctgcatatatctgggtttatggttggttttggagtggtgaattggcagcagaat 217  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  23865842 ggaatggcaggtgtggttgggtatggtttagtctgttcgccgattgctgcatatatctgtgtttatggttggttttggagtggtgaactggcagcagaat 23865743  T
Q  218 gtgat 222  Q
    |||||    
T  23865742 gtgat 23865738  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 23359300 - 23359392
Alignment:
Q  131 tggttgggtatggtttagtctgt-tcgccgattgctgcatatatctgggtttatggttggttttggagtggtgaattggcagcagaatgtgat 222  Q
    ||||| |||| |||||||||| | | || |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||    
T  23359300 tggttcggtacggtttagtctctctggctgattgctgcatatatctgtgtttctggttggttttggagtggtgaattggcagcagaaggtgat 23359392  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 23364121 - 23364213
Alignment:
Q  131 tggttgggtatggtttagtctgt-tcgccgattgctgcatatatctgggtttatggttggttttggagtggtgaattggcagcagaatgtgat 222  Q
    ||||| |||| |||||||||| | | || |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||    
T  23364121 tggttcggtacggtttagtctctctggctgattgctgcatatatctgtgtttctggttggttttggagtggtgaattggcagcagaaggtgat 23364213  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 23694599 - 23694691
Alignment:
Q  131 tggttgggtatggtttagtctgt-tcgccgattgctgcatatatctgggtttatggttggttttggagtggtgaattggcagcagaatgtgat 222  Q
    ||||| |||| |||||||||| | | || |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||    
T  23694599 tggttcggtacggtttagtctctctggctgattgctgcatatatctgtgtttctggttggttttggagtggtgaattggcagcagaaggtgat 23694691  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 23713039 - 23713131
Alignment:
Q  131 tggttgggtatggtttagtctgt-tcgccgattgctgcatatatctgggtttatggttggttttggagtggtgaattggcagcagaatgtgat 222  Q
    ||||| |||| |||||||||| | | || |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||    
T  23713039 tggttcggtacggtttagtctctctggctgattgctgcatatatctgtgtttctggttggttttggagtggtgaattggcagcagaaggtgat 23713131  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 23731495 - 23731587
Alignment:
Q  131 tggttgggtatggtttagtctgt-tcgccgattgctgcatatatctgggtttatggttggttttggagtggtgaattggcagcagaatgtgat 222  Q
    ||||| |||| |||||||||| | | || |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||    
T  23731495 tggttcggtacggtttagtctctctggctgattgctgcatatatctgtgtttctggttggttttggagtggtgaattggcagcagaaggtgat 23731587  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 23749950 - 23750042
Alignment:
Q  131 tggttgggtatggtttagtctgt-tcgccgattgctgcatatatctgggtttatggttggttttggagtggtgaattggcagcagaatgtgat 222  Q
    ||||| |||| |||||||||| | | || |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||    
T  23749950 tggttcggtacggtttagtctctctggctgattgctgcatatatctgtgtttctggttggttttggagtggtgaattggcagcagaaggtgat 23750042  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 47510735 - 47510775
Alignment:
Q  40 cctttgggacatttattaaagtactaaaataagtaggtttg 80  Q
    |||||||| |||| ||||||||||||||||||||| |||||    
T  47510735 cctttggggcattgattaaagtactaaaataagtaagtttg 47510775  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 54335301 - 54335236
Alignment:
Q  18 ataaggagaataataataaatgcctttgggacatttattaaagtactaaaataagtaggtttgcat 83  Q
    |||||||||||| |||||  || | ||||| ||||  |||||||||||||||||||| ||||||||    
T  54335301 ataaggagaatactaatatgtgtcattggggcattggttaaagtactaaaataagtaagtttgcat 54335236  T

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