View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7890_low_16 (Length: 231)
Name: NF7890_low_16
Description: NF7890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7890_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 25065065 - 25064870
Alignment:
| Q |
19 |
attgctacaccattagtttacacatctgataccttttcagtgccttgagtatgttaatgattaatccatttatcttccttgaactgatgcagtgcttctc |
118 |
Q |
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| T |
25065065 |
attgctacaccattagtttacacatctgataccttttcagtgccttgagtatgttaatgattaatccatttatcttccttgaactgatgcagtgcttctc |
25064966 |
T |
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| Q |
119 |
ttcaaaacaatacaccatctgatcataacattgagaagatagagaaaattatttcaactcataagttatgggatgcagattatctacctttcaatt |
214 |
Q |
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| T |
25064965 |
ttcaaaacaatacaccatctgatcataacattgagaagatagagaaaattatttcaactcataagttatgggatgcagattatctacctttcaatt |
25064870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 25086398 - 25086307
Alignment:
| Q |
122 |
aaaacaatacaccatctgatcataacattgagaagatagagaaaattatttcaactcataagttatgggatgcagattatctacctttcaat |
213 |
Q |
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| T |
25086398 |
aaaacaagtcaccatctgatcataacattgagaagatagagaaaactatttcaactcagaagttatgggatgcatattatctacctttcaat |
25086307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 25440610 - 25440521
Alignment:
| Q |
78 |
attaatccatttatcttccttgaactgatgcagtgcttctcttc--aaaacaataca-ccatctgatcataacattgagaagatagagaa |
164 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| || | ||||||||||| |||||| ||||||| |
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| T |
25440610 |
attaatccatttgtcttccttcaactgatgcagtgcttctcttcaaaaaacaatacacccttttgatcataacagtgagaaactagagaa |
25440521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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