View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7890_low_2 (Length: 450)
Name: NF7890_low_2
Description: NF7890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7890_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 8287456 - 8287205
Alignment:
| Q |
10 |
cgcacacacgcccacgttacttttcaacttcgcatcaaaaaacaaaaccatctttctcacaatatataaacccaagcacaccacacaatgcggaaatccg |
109 |
Q |
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| T |
8287456 |
cgcacacacacccacgttacttttcaacttcgcatcaaaaaacaaaaccatctttctcacaatatataaacccaagcacaccacacaatgcggaaatccg |
8287357 |
T |
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| Q |
110 |
ctgcagacagattcagacatcttttcaaccgttcgcttgtctttgttcggaatcaaaaccaacaatatcaccatccttctccccttcgttctttgtcttc |
209 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8287356 |
ctgcagatagattcagacatcttttcaaccgttcgcttgtctttgttcggaatcaaaaccaacaatatcaccatccttctccccttcgttctttgtcttc |
8287257 |
T |
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| Q |
210 |
aatggcttctgattcacctttccctgttaccgctcaaaatattaaccctcag |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8287256 |
aatggcttctgattcacctttccctgttaccgctcaaaatattaaccctcag |
8287205 |
T |
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