View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7890_low_3 (Length: 447)
Name: NF7890_low_3
Description: NF7890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7890_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 18870745 - 18871175
Alignment:
| Q |
1 |
ggttaaagggtatgcaaaggaaagctcagttccctttagagaaagactcaaaattttggctggagtagttaatccagaagaccttaatctgagttctgca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18870745 |
ggttaaagggtatgcaaaggaaagctcagttccctttagagaaagactcaaaattttggctggagtagttaatccagaagaccttaatctgagttctgca |
18870844 |
T |
|
| Q |
101 |
gagaggaaacttatacacgcttacaatggcaagccagtgctttcgcgtcctcaacaccaattctttaaggtatatacaaatttatgtcttgattggatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18870845 |
gagaggaaacttatacacgcttacaatggcaagccagtgctttcgcgtcctcaacaccaattctttaaggtatatacaaattaatgtcttgattggatta |
18870944 |
T |
|
| Q |
201 |
aaatatctgtctacttctcaaagaactgtaagcgtaaagatttttacaacgtcattcaatcgtaattgtcagatcattaaacgtgtttgaccttaatgat |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
18870945 |
aaatatctgtctacttctcaaagaaatgtaagcgtaaagatttttactccgtcattcaatcgtaattgtcagatcattaaacacgtttgaccttaatgat |
18871044 |
T |
|
| Q |
301 |
aactacttctaaagtcacatgtatgatagcttgtgatttgttgattttgcactggtagtgtattaaaattaagctcgcatagttatggcgttattgattg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18871045 |
aactacttctaaagtcacatgtatgatagcttgtgatttgttgattttgcactggtagtgtattaacattaagctcgcatagttatggcgttattgattg |
18871144 |
T |
|
| Q |
401 |
acttgagtctgataattcagaaaggggattg |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
18871145 |
acttgagtctgataattcagaaaggggattg |
18871175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 234 - 344
Target Start/End: Complemental strand, 16230865 - 16230755
Alignment:
| Q |
234 |
gtaaagatttttacaacgtcattcaatcgtaattgtcagatcattaaacgtgtttgaccttaatgataactacttctaaagtcacatgtatgatagcttg |
333 |
Q |
| |
|
||||||||||||||| |||| || |||||||| | | ||||||| || |||||||| ||||| ||||||||||||||| ||| | |||||| | ||| |
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|
| T |
16230865 |
gtaaagatttttacactgtcaatcgatcgtaatcgactgatcatttaaaatgtttgactttaatcataactacttctaaaatcaaacatatgattggttg |
16230766 |
T |
|
| Q |
334 |
tgatttgttga |
344 |
Q |
| |
|
||||||||||| |
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|
| T |
16230765 |
tgatttgttga |
16230755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 341
Target Start/End: Original strand, 43059472 - 43059527
Alignment:
| Q |
286 |
tttgaccttaatgataactacttctaaagtcacatgtatgatagcttgtgatttgt |
341 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
43059472 |
tttgactttaataataactacttctaaagtcacatgtatgactggttgtgatttgt |
43059527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 344
Target Start/End: Complemental strand, 30011839 - 30011736
Alignment:
| Q |
241 |
tttttacaacgtcattcaatcgtaattgtcagatcattaaacgtgtttgaccttaatgataactacttctaaagtcacatgtatgatagcttgtgatttg |
340 |
Q |
| |
|
|||||||| |||| |||||| || |||||| | ||||||| |||||||| | ||| ||||||||||||||| ||||| |||||| | || ||||||| |
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|
| T |
30011839 |
tttttacactgtcaatcaatcatacttgtcataacattaaaaatgtttgacttcaatcataactacttctaaaatcacacatatgattgattttgatttg |
30011740 |
T |
|
| Q |
341 |
ttga |
344 |
Q |
| |
|
|||| |
|
|
| T |
30011739 |
ttga |
30011736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 39560405 - 39560344
Alignment:
| Q |
256 |
tcaatcgtaattgtcagatcattaaacgtgtttgaccttaatgataactacttctaaagtca |
317 |
Q |
| |
|
||||||||||| || ||||||||| |||||||| ||||| ||||||||||||||||||| |
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|
| T |
39560405 |
tcaatcgtaatcaccatatcattaaaaatgtttgactttaatcataactacttctaaagtca |
39560344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 31650298 - 31650352
Alignment:
| Q |
263 |
taattgtcagatcattaaacgtgtttgaccttaatgataactacttctaaagtca |
317 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||| ||||||||||||||||||| |
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|
| T |
31650298 |
taattgtcggatcattaaaaatgtttgactttaatcataactacttctaaagtca |
31650352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 8782991 - 8783049
Alignment:
| Q |
286 |
tttgaccttaatgataactacttctaaagtcacatgtatgatagcttgtgatttgttga |
344 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||| || |||||| | |||||||||||||| |
|
|
| T |
8782991 |
tttgactttaatcataactacttcaaaagtcatatatatgattggttgtgatttgttga |
8783049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 319
Target Start/End: Original strand, 35169947 - 35170024
Alignment:
| Q |
242 |
ttttacaacgtcattcaatcgtaattgtcagatcattaaacgtgtttgaccttaatgataactacttctaaagtcaca |
319 |
Q |
| |
|
||||||| |||| ||||| ||||| || |||| |||||| |||||||| ||||| ||||||||||||||||||||| |
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|
| T |
35169947 |
ttttacactgtcaatcaattgtaatcgttagattattaaagatgtttgactttaatcataactacttctaaagtcaca |
35170024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 46214456 - 46214538
Alignment:
| Q |
257 |
caatcgtaattgtcagatcattaaacgtgtttgaccttaatgataactacttctaaagtcacatgtatgatagcttgtgattt |
339 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||||| ||||| || | ||||||||||||| |||||||| ||||||||||| |
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|
| T |
46214456 |
caatcgtaatagtcagatcataaaaaacgtttgactttaatcattatgacttctaaagtcatgtgtatgattgcttgtgattt |
46214538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 15867685 - 15867621
Alignment:
| Q |
241 |
tttttacaacgtcattcaatcgtaattgtcagatcattaaacgtgtttgaccttaatgataacta |
305 |
Q |
| |
|
|||||||||||||| |||||| |||| |||| ||||||||| |||||||| ||||| ||||||| |
|
|
| T |
15867685 |
tttttacaacgtcaatcaatcataatcgtcatatcattaaaactgtttgactttaatcataacta |
15867621 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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