View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7890_low_5 (Length: 350)
Name: NF7890_low_5
Description: NF7890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7890_low_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 118 - 350
Target Start/End: Original strand, 2591562 - 2591794
Alignment:
| Q |
118 |
atgcagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattcatggatcaaaaagaaaattagaaagtct |
217 |
Q |
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| T |
2591562 |
atgcagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattcatggatcaaaaagaaaattagaaagtca |
2591661 |
T |
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| Q |
218 |
tcttcttctgctcctaatttatcaacaccaactattgatcatcatcatcctcagttgatcaattatagttccattaatcaactagataattactttacca |
317 |
Q |
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| T |
2591662 |
tcttcttctgctcctaatttatcaacaccaactattgatcatcatcatcctcagttgatcaattatagttccattaatcaactagataattactttacca |
2591761 |
T |
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| Q |
318 |
accaagaaaatgtaacaacaaaagaaaccttat |
350 |
Q |
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| T |
2591762 |
accaagaaaatgtaacaacaaaagaaaccttat |
2591794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2591450 - 2591518
Alignment:
| Q |
1 |
caagtttttctctaaatgtatgcttataaatcacggttttatttttatttaagaatcttaattacaaag |
69 |
Q |
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| T |
2591450 |
caagtttttctctaaatgtatgcttataaatcacggttttatttttatttaagaatcttaattacaaag |
2591518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 41350463 - 41350367
Alignment:
| Q |
118 |
atgcagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattcatggatcaaaaagaaaattagaaag |
214 |
Q |
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| T |
41350463 |
atgcagatgggctcacattgcaagccacttacctggtagaacagacaatgaaataaagaattactggaattcttggatcaaaaagaaaataagaaag |
41350367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 5948292 - 5948223
Alignment:
| Q |
121 |
cagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattca |
190 |
Q |
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| T |
5948292 |
cagatgggctcaaattgcaaagcacttacctggaagaacagataatgagataaaaaacttttggaattca |
5948223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 5983905 - 5983836
Alignment:
| Q |
121 |
cagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattca |
190 |
Q |
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| T |
5983905 |
cagatgggctcagattgcaaaacacttacctggaagaacagataatgaggtgaaaaacttttggaattca |
5983836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 53557726 - 53557763
Alignment:
| Q |
149 |
cctggtagaacagacaatgaaataaaaaactattggaa |
186 |
Q |
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| T |
53557726 |
cctggaagaacagacaatgacataaaaaactattggaa |
53557763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 38707210 - 38707243
Alignment:
| Q |
152 |
ggtagaacagacaatgaaataaaaaactattgga |
185 |
Q |
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| T |
38707210 |
ggtagaacggacaatgaaataaaaaactattgga |
38707243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 44676906 - 44676854
Alignment:
| Q |
134 |
attgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaa |
186 |
Q |
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| T |
44676906 |
attgcaagtcacttgccaggcagaacagacaacgagattaaaaactactggaa |
44676854 |
T |
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