View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7890_low_6 (Length: 342)

Name: NF7890_low_6
Description: NF7890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7890_low_6
NF7890_low_6
[»] chr7 (9 HSPs)
chr7 (128-325)||(3704260-3704457)
chr7 (144-281)||(3696741-3696877)
chr7 (58-125)||(47233427-47233494)
chr7 (58-125)||(25419174-25419241)
chr7 (269-314)||(15135382-15135427)
chr7 (58-125)||(44394130-44394197)
chr7 (269-318)||(11671293-11671342)
chr7 (79-115)||(8105653-8105689)
chr7 (269-313)||(35711972-35712016)
[»] chr3 (11 HSPs)
chr3 (1-127)||(16345996-16346123)
chr3 (58-125)||(35870812-35870879)
chr3 (58-125)||(52350202-52350269)
chr3 (146-263)||(7879623-7879743)
chr3 (67-125)||(48266730-48266788)
chr3 (172-257)||(42316571-42316656)
chr3 (262-318)||(30700292-30700348)
chr3 (269-320)||(22942339-22942390)
chr3 (79-128)||(2310018-2310067)
chr3 (129-202)||(3491973-3492046)
chr3 (260-320)||(32558913-32558973)
[»] chr6 (9 HSPs)
chr6 (37-127)||(20418319-20418410)
chr6 (58-125)||(13433052-13433119)
chr6 (144-263)||(34940984-34941103)
chr6 (58-125)||(16711719-16711786)
chr6 (269-318)||(4496508-4496557)
chr6 (269-325)||(8752800-8752856)
chr6 (79-127)||(20415790-20415838)
chr6 (79-127)||(20420355-20420403)
chr6 (79-127)||(30519029-30519077)
[»] scaffold0507 (1 HSPs)
scaffold0507 (50-127)||(10485-10562)
[»] chr2 (12 HSPs)
chr2 (35-127)||(15408638-15408732)
chr2 (1-54)||(23736252-23736305)
chr2 (58-125)||(7573690-7573757)
chr2 (58-125)||(16668285-16668352)
chr2 (58-125)||(29455796-29455863)
chr2 (77-133)||(33809746-33809802)
chr2 (261-320)||(8803306-8803365)
chr2 (266-316)||(44463566-44463616)
chr2 (78-127)||(35957730-35957779)
chr2 (264-317)||(37393887-37393940)
chr2 (79-127)||(6050968-6051016)
chr2 (269-325)||(22053128-22053184)
[»] scaffold0017 (1 HSPs)
scaffold0017 (35-128)||(467-562)
[»] chr1 (12 HSPs)
chr1 (144-263)||(27730340-27730459)
chr1 (34-128)||(6472738-6472835)
chr1 (1-52)||(22062872-22062923)
chr1 (58-125)||(13786705-13786772)
chr1 (58-125)||(25807370-25807437)
chr1 (263-325)||(50317050-50317112)
chr1 (173-241)||(4037894-4037962)
chr1 (65-125)||(22912170-22912230)
chr1 (77-123)||(39623921-39623967)
chr1 (168-256)||(4038342-4038430)
chr1 (269-325)||(7185856-7185912)
chr1 (269-325)||(31321012-31321068)
[»] chr5 (6 HSPs)
chr5 (128-263)||(22524758-22524893)
chr5 (58-125)||(36991517-36991584)
chr5 (184-265)||(15905038-15905119)
chr5 (264-325)||(16308563-16308624)
chr5 (61-114)||(21604738-21604791)
chr5 (269-325)||(27756785-27756841)
[»] chr4 (23 HSPs)
chr4 (58-125)||(2500249-2500315)
chr4 (148-263)||(52388083-52388198)
chr4 (58-125)||(46092774-46092841)
chr4 (58-125)||(53830110-53830177)
chr4 (145-242)||(41021848-41021945)
chr4 (58-125)||(2504600-2504667)
chr4 (78-127)||(10664868-10664917)
chr4 (82-127)||(10714272-10714317)
chr4 (78-127)||(10879013-10879062)
chr4 (82-127)||(10928042-10928087)
chr4 (50-107)||(54800825-54800882)
chr4 (58-125)||(20036711-20036777)
chr4 (269-320)||(54534981-54535032)
chr4 (128-241)||(23312864-23312977)
chr4 (58-125)||(5431175-5431242)
chr4 (263-318)||(42889817-42889872)
chr4 (79-128)||(1393352-1393401)
chr4 (129-242)||(19200449-19200562)
chr4 (68-125)||(21632390-21632447)
chr4 (68-125)||(21803361-21803418)
chr4 (263-320)||(38157017-38157074)
chr4 (256-325)||(42977188-42977257)
chr4 (178-222)||(52388202-52388246)
[»] chr8 (16 HSPs)
chr8 (58-124)||(918594-918660)
chr8 (78-128)||(35689986-35690036)
chr8 (167-240)||(15579421-15579494)
chr8 (78-127)||(21361476-21361525)
chr8 (78-127)||(26048020-26048069)
chr8 (269-325)||(3158037-3158093)
chr8 (269-325)||(25265905-25265961)
chr8 (58-125)||(20172419-20172486)
chr8 (255-325)||(33295445-33295515)
chr8 (189-262)||(8335188-8335261)
chr8 (277-318)||(26719396-26719437)
chr8 (269-317)||(5461937-5461985)
chr8 (269-317)||(15279641-15279689)
chr8 (269-317)||(15460010-15460058)
chr8 (79-127)||(19388083-19388131)
chr8 (178-242)||(32979946-32980010)
[»] scaffold0516 (1 HSPs)
scaffold0516 (74-114)||(3735-3775)
[»] scaffold0076 (1 HSPs)
scaffold0076 (88-128)||(54535-54575)
[»] scaffold0010 (1 HSPs)
scaffold0010 (79-127)||(136051-136099)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 7e-77; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 128 - 325
Target Start/End: Original strand, 3704260 - 3704457
Alignment:
Q  128 acaacaaagatggaatgattctactcaattaactttttaggattaaaagtggatatcaagatcgtaaaacataatatcgcaaccataatcgaagaatcgt 227  Q
    ||||| ||||| |||||||||||||||||||| ||| |||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |    
T  3704260 acaaccaagatcgaatgattctactcaattaattttgtaggatcaaaagtggatagcaagatcgtaaaacataatatcgcaaccatgatcgaagaatcct 3704359  T
Q  228 accaaaacaaaaatagtacaaaacatatattatataaaggattaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtccctttatc 325  Q
    ||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  3704360 accaaaacaaaaataatacgaaacatatattatataaaggcttaaataggtaaatcgtccatgtaagttcgcttgtttttggttttcgtccctttatc 3704457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 144 - 281
Target Start/End: Original strand, 3696741 - 3696877
Alignment:
Q  144 gattctactcaattaactttttaggattaaaagtggatatcaagatcgtaaaacataatatcgcaaccataatcgaagaatcgtaccaaaacaaaaatag 243  Q
    |||||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||| ||||||| ||| ||||||||||  |||||||||||||||||    
T  3696741 gattctactcaattaattttgtagaattaaaagtggatagcaagatcgtaaaacataacatcgcaaacatgatcgaagaattctaccaaaacaaaaatag 3696840  T
Q  244 tacaaaacatatattatataaaggattaaataggtaaa 281  Q
    ||| |||||||||||||||||| | |||||||||||||    
T  3696841 tacgaaacatatattatataaa-gcttaaataggtaaa 3696877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 47233427 - 47233494
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||| |||||||||| || |||||||    
T  47233427 aaaatattcattttttatgcatttttaatatgtttccttccacatgtttagtgaactcttgatctcat 47233494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 25419174 - 25419241
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||| | |||||||| || |||||||    
T  25419174 aaaatattcattttttatgcatttttaatatgtttccttccacatgttcagtgaactcttgatctcat 25419241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 15135382 - 15135427
Alignment:
Q  269 ttaaataggtaaatcgtctatgtaagttcgcttgttttttgttttc 314  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  15135382 ttaaatatgtaaatcgtttatgtaagttcgcttgttttttgttttc 15135427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 44394197 - 44394130
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    |||||||| ||| || |||| ||||| ||| ||||||||||||||| |||||||||| || |||||||    
T  44394197 aaaatattaattgtttatgcttttttaatatgtttccttccacatgtttagtgaactcttgatctcat 44394130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 11671342 - 11671293
Alignment:
Q  269 ttaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtcc 318  Q
    ||||||| ||||||||||   |||||||||| ||||||||||||||||||    
T  11671342 ttaaatatgtaaatcgtccccgtaagttcgcgtgttttttgttttcgtcc 11671293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 8105653 - 8105689
Alignment:
Q  79 ttttttataggtttccttccacatgcttagtgaactt 115  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  8105653 ttttttatatgtttccttccacatgcttaatgaactt 8105689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 35712016 - 35711972
Alignment:
Q  269 ttaaataggtaaatcgtctatgtaagttcgcttgttttttgtttt 313  Q
    |||||||| ||||||||| |||||||||||| |||||||| ||||    
T  35712016 ttaaatagttaaatcgtcaatgtaagttcgcatgttttttatttt 35711972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 16345996 - 16346123
Alignment:
Q  1 ctcatagaagaaattattcaattagaaaatatgatgctgacttggaattaaatgaataaaatattcatttttcatgca-ttttttataggtttccttcca 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16345996 ctcatagaagaaattattcaattagaaaatatgatgctgacttggaattaaatgaataaaatattcatttttcatgcatttttttataggtttccttcca 16346095  T
Q  100 catgcttagtgaacttttcatctcatca 127  Q
    |||||||| ||||||||| |||||||||    
T  16346096 catgcttaatgaacttttgatctcatca 16346123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 35870879 - 35870812
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||| |||||||||| || |||||||    
T  35870879 aaaatattcattttttatgcatttttaatatgtttccttccacatgtttagtgaactcttgatctcat 35870812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 52350269 - 52350202
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||| | |||||||| || |||||||    
T  52350269 aaaatattcattttttatgcatttttaatatgtttccttccacatgttcagtgaactcttgatctcat 52350202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 263
Target Start/End: Complemental strand, 7879743 - 7879623
Alignment:
Q  146 ttctactcaattaactttttaggattaaaagtggatatcaagatcgtaaaacataatatcgcaaccataatcgaagaatcgtac---caaaacaaaaata 242  Q
    |||||||||||||| ||| ||||||  ||||| | || |||||||||||||||||| |||| |||||  || |||| ||| |||   ||||||||||| |    
T  7879743 ttctactcaattaattttgtaggatcgaaagtagttagcaagatcgtaaaacataaaatcgaaaccaagatagaaggatcctactaacaaaacaaaaaca 7879644  T
Q  243 gtacaaaacatatattatata 263  Q
     ||| ||| ||||||||||||    
T  7879643 atactaaatatatattatata 7879623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 48266788 - 48266730
Alignment:
Q  67 atttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    |||||| |||||||||| ||| ||||||||||||||| |||||||||| || |||||||    
T  48266788 attttttatgcatttttaatatgtttccttccacatgtttagtgaactcttgatctcat 48266730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 257
Target Start/End: Original strand, 42316571 - 42316656
Alignment:
Q  172 aaaagtggatatcaagatcgtaaaacataatatcgcaaccataatcgaagaatcgtaccaaaacaaaaatagtacaaaacatatat 257  Q
    ||||| ||||| |||| ||||||||||||| ||||||||||  ||| ||| ||| |||||||||||||  ||||| ||| ||||||    
T  42316571 aaaaggggatagcaagctcgtaaaacataaaatcgcaaccaagatcaaaggatcctaccaaaacaaaataagtactaaatatatat 42316656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 30700292 - 30700348
Alignment:
Q  262 taaaggattaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtcc 318  Q
    |||||| ||||||| ||||||||||| | ||||||||| ||||||| ||||||||||    
T  30700292 taaaggtttaaatatgtaaatcgtctctttaagttcgcgtgtttttggttttcgtcc 30700348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 22942339 - 22942390
Alignment:
Q  269 ttaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtccct 320  Q
    ||||||| ||||||||||  ||||||||||||||||||| |||||| |||||    
T  22942339 ttaaatatgtaaatcgtccctgtaagttcgcttgtttttggttttcatccct 22942390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 2310018 - 2310067
Alignment:
Q  79 ttttttataggtttccttccacatgcttagtgaacttttcatctcatcaa 128  Q
    ||||||||| ||||||||||||||||||| ||| || || ||||||||||    
T  2310018 ttttttatatgtttccttccacatgcttaatgagctcttgatctcatcaa 2310067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 3491973 - 3492046
Alignment:
Q  129 caacaaagatggaatgattctactcaattaactttttaggattaaaagtggatatcaagatcgtaaaacataat 202  Q
    |||| ||||| ||| |||||||||||||||| ||| || |||| |||  ||||| ||||| |||||||||||||    
T  3491973 caaccaagatagaaggattctactcaattaattttgtaagattgaaaagggatagcaagaacgtaaaacataat 3492046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 32558913 - 32558973
Alignment:
Q  260 tataaaggattaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtccct 320  Q
    |||| ||| ||||||| |||||  |||  ||||||||||| ||||||||||||||||||||    
T  32558913 tatataggcttaaatatgtaaaaggtccctgtaagttcgcgtgttttttgttttcgtccct 32558973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 20418319 - 20418410
Alignment:
Q  37 ctgacttggaattaaa-tgaataaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcatca 127  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20418319 ctgacttgaaattaaaatgaataaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttgatctcatca 20418410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 13433052 - 13433119
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||| | |||||||| || |||||||    
T  13433052 aaaatattcattttttatgcatttttaatatgtttccttccacatgttcagtgaactcttgatctcat 13433119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 263
Target Start/End: Original strand, 34940984 - 34941103
Alignment:
Q  144 gattctactcaattaactttttaggattaaaagtggatatcaagatcgtaaaacataatatcgcaaccataatcgaagaatcgtaccaaaacaaaaatag 243  Q
    |||||||||| ||||| ||||||||||  |||| ||||| |||||| ||||||||| | |||||||| |  ||||||  | | ||||||||||||||||     
T  34940984 gattctactcgattaattttttaggatcgaaaggggatagcaagattgtaaaacatgaaatcgcaactaagatcgaacgaccctaccaaaacaaaaatat 34941083  T
Q  244 tacaaaacatatattatata 263  Q
    ||| ||| |||| |||||||    
T  34941084 tactaaatatatgttatata 34941103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 16711719 - 16711786
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    |||||||||||| || |||| ||||| ||| ||||||||||||||| |||||||||| || |||||||    
T  16711719 aaaatattcattgtttatgcttttttaatatgtttccttccacatgtttagtgaactcttgatctcat 16711786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 4496508 - 4496557
Alignment:
Q  269 ttaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtcc 318  Q
    ||||||||||||||||||  ||||||||| | ||||||| ||||||||||    
T  4496508 ttaaataggtaaatcgtcattgtaagttcacgtgtttttggttttcgtcc 4496557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 8752856 - 8752800
Alignment:
Q  269 ttaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtccctttatc 325  Q
    ||||||| ||||||||||| ||||| || || ||||||| |||||||||||| ||||    
T  8752856 ttaaatatgtaaatcgtctctgtaatttggcgtgtttttggttttcgtccctgtatc 8752800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 20415790 - 20415838
Alignment:
Q  79 ttttttataggtttccttccacatgcttagtgaacttttcatctcatca 127  Q
    ||||||||| ||||||||||||||||||| ||| || || |||||||||    
T  20415790 ttttttatatgtttccttccacatgcttaatgatctcttgatctcatca 20415838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 20420355 - 20420403
Alignment:
Q  79 ttttttataggtttccttccacatgcttagtgaacttttcatctcatca 127  Q
    ||||||||| ||||||||||||||||||| ||| || || |||||||||    
T  20420355 ttttttatatgtttccttccacatgcttaatgagctcttgatctcatca 20420403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 30519029 - 30519077
Alignment:
Q  79 ttttttataggtttccttccacatgcttagtgaacttttcatctcatca 127  Q
    ||||||||| ||||||||||||||||||| ||| || || |||||||||    
T  30519029 ttttttatatgtttccttccacatgcttaatgagctcttgatctcatca 30519077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0507 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 10562 - 10485
Alignment:
Q  50 aaatgaataaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcatca 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10562 aaatgaataaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttgatctcatca 10485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 15408732 - 15408638
Alignment:
Q  35 tgctgacttggaattaaa-tgaataaaatattcatttttcatgcatttttt-ataggtttccttccacatgcttagtgaacttttcatctcatca 127  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||    
T  15408732 tgctgacttggaattaaaatgaataaaatattcatttttcatgcatttttttataggtttccttccacatgcttaatgaacttttgatctcatca 15408638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23736252 - 23736305
Alignment:
Q  1 ctcatagaagaaattattcaattagaaaatatgatgctgacttggaattaaatg 54  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  23736252 ctcatagaagaaattattcaatttgaaaatatgatgctgatttggaattaaatg 23736305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 7573690 - 7573757
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||| | |||||||| || |||||||    
T  7573690 aaaatattcattttttatgcatttttaatatgtttccttccacatgttcagtgaactcttgatctcat 7573757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 16668285 - 16668352
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||| | |||||||| || |||||||    
T  16668285 aaaatattcattttttatgcatttttaatatgtttccttccacatgttcagtgaactcttgatctcat 16668352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 29455863 - 29455796
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||  |||||||||| || |||||||    
T  29455863 aaaatattcattttttatgcatttttaatatgtttccttccacatatttagtgaactcttgatctcat 29455796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 33809802 - 33809746
Alignment:
Q  77 cattttttataggtttccttccacatgcttagtgaacttttcatctcatcaacaaca 133  Q
    ||||||||||||||||||||||||||||||||| || | || |||||||||| ||||    
T  33809802 cattttttataggtttccttccacatgcttagtaaattcttgatctcatcaaaaaca 33809746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 320
Target Start/End: Complemental strand, 8803365 - 8803306
Alignment:
Q  261 ataaaggattaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtccct 320  Q
    ||||||| ||||||| ||||||||||| ||||||||||| || |||| ||||||||||||    
T  8803365 ataaaggcttaaataagtaaatcgtctttgtaagttcgcatgattttggttttcgtccct 8803306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 44463566 - 44463616
Alignment:
Q  266 ggattaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgt 316  Q
    |||||||||| ||||||||||||||||||||||  ||||||| ||||||||    
T  44463566 ggattaaatatgtaaatcgtctatgtaagttcgtgtgtttttggttttcgt 44463616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 35957730 - 35957779
Alignment:
Q  78 attttttataggtttccttccacatgcttagtgaacttttcatctcatca 127  Q
    |||||||||||||||||||||||||||||||| || | || |||||||||    
T  35957730 attttttataggtttccttccacatgcttagtaaattcttgatctcatca 35957779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 37393887 - 37393940
Alignment:
Q  264 aaggattaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtc 317  Q
    |||| |||||||||||||||||  |||||||||| | |||||||||||||||||    
T  37393887 aaggtttaaataggtaaatcgttcatgtaagttcacgtgttttttgttttcgtc 37393940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 6050968 - 6051016
Alignment:
Q  79 ttttttataggtttccttccacatgcttagtgaacttttcatctcatca 127  Q
    ||||||||| ||||||||||||||||||| ||| ||||| |||||||||    
T  6050968 ttttttatatgtttccttccacatgcttaatgagcttttgatctcatca 6051016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 22053128 - 22053184
Alignment:
Q  269 ttaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtccctttatc 325  Q
    ||||||| |||||  |||| ||||||||||| |||||||||||||||||||| ||||    
T  22053128 ttaaatatgtaaaaggtctttgtaagttcgcgtgttttttgttttcgtccctgtatc 22053184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 467 - 562
Alignment:
Q  35 tgctgacttggaattaaa-tgaataaaatattcatttttcatgca-ttttttataggtttccttccacatgcttagtgaacttttcatctcatcaa 128  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||  |||||||||    
T  467 tgctgacttggaattaaaatgaataaaatattcatttttcatgcatttttttattggtttccttccacatgcttaatgaacttttgttctcatcaa 562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 263
Target Start/End: Original strand, 27730340 - 27730459
Alignment:
Q  144 gattctactcaattaactttttaggattaaaagtggatatcaagatcgtaaaacataatatcgcaaccataatcgaagaatcgtaccaaaacaaaaatag 243  Q
    |||||||||||||||| | | ||||||| |||  ||||| |||||||||||||||||| ||||||||||  ||||||| ||| ||||||||||||||||     
T  27730340 gattctactcaattaattctgtaggattgaaatgggatagcaagatcgtaaaacataaaatcgcaaccaagatcgaaggatcctaccaaaacaaaaataa 27730439  T
Q  244 tacaaaacatatattatata 263  Q
     || ||| ||||||||||||    
T  27730440 aactaaatatatattatata 27730459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 6472835 - 6472738
Alignment:
Q  34 atgctgacttggaattaaa-tgaataaaatattcatttttcatgcatttttt--ataggtttccttccacatgcttagtgaacttttcatctcatcaa 128  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||||||||||  |||| |||||||||||||| ||| ||||||||| ||||||||||    
T  6472835 atgctgacttgaaattaaaataaataaaatattcatttttcatgcattttttttatagatttccttccacatgtttaatgaacttttgatctcatcaa 6472738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22062872 - 22062923
Alignment:
Q  1 ctcatagaagaaattattcaattagaaaatatgatgctgacttggaattaaa 52  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22062872 ctcatagaagaaattattcaattagaaaatatgatgctgatttggaattaaa 22062923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 13786772 - 13786705
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||| | |||||||| || |||||||    
T  13786772 aaaatattcattttttatgcatttttaatatgtttccttccacatgttcagtgaactcttgatctcat 13786705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 25807370 - 25807437
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||| | |||||||| || |||||||    
T  25807370 aaaatattcattttttatgcatttttaatatgtttccttccacatgttcagtgaactcttgatctcat 25807437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 325
Target Start/End: Complemental strand, 50317112 - 50317050
Alignment:
Q  263 aaaggattaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtccctttatc 325  Q
    ||||| ||||||| |||||||||| |||||||||||| |||||||  ||||||||||| ||||    
T  50317112 aaaggtttaaatatgtaaatcgtccatgtaagttcgcgtgtttttgattttcgtccctgtatc 50317050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 4037894 - 4037962
Alignment:
Q  173 aaagtggatatcaagatcgtaaaacataatatcgcaaccataatcgaagaatcgtaccaaaacaaaaat 241  Q
    |||| ||||| ||||||||||| |||||| ||||||||||  || |||| ||| |||||||||||||||    
T  4037894 aaaggggatagcaagatcgtaagacataagatcgcaaccaagattgaaggatcctaccaaaacaaaaat 4037962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 22912170 - 22912230
Alignment:
Q  65 tcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    |||||||| |||||||||| ||| | ||||||||||||| |||||||||| || |||||||    
T  22912170 tcattttttatgcatttttaatatgcttccttccacatgtttagtgaactcttgatctcat 22912230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 39623967 - 39623921
Alignment:
Q  77 cattttttataggtttccttccacatgcttagtgaacttttcatctc 123  Q
    ||||||||||| ||||||||||||||| |||||||||| || |||||    
T  39623967 cattttttatatgtttccttccacatgtttagtgaactcttgatctc 39623921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 4038430 - 4038342
Alignment:
Q  168 gattaaaagtggatatcaagatcgtaaaacataatatcgcaaccataatcgaagaatcgtaccaaaacaaaaatagtacaaaacatata 256  Q
    |||| |||| ||||| ||||||| |||||||||  ||| ||||||  ||| ||||||| ||| |||||||||||| ||| ||| |||||    
T  4038430 gattgaaaggggatagcaagatcataaaacatacgatcacaaccaagatcaaagaatcctacgaaaacaaaaataataccaaatatata 4038342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 7185912 - 7185856
Alignment:
Q  269 ttaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtccctttatc 325  Q
    ||||||| | ||||||||  |||||||| || |||||||||||||||||||| ||||    
T  7185912 ttaaatatgcaaatcgtccttgtaagtttgcatgttttttgttttcgtccctgtatc 7185856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 31321012 - 31321068
Alignment:
Q  269 ttaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtccctttatc 325  Q
    |||||||| |||||| ||  ||||||||||| ||||||| |||||||||||| ||||    
T  31321012 ttaaatagttaaatcatccctgtaagttcgcgtgtttttggttttcgtccctgtatc 31321068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 263
Target Start/End: Complemental strand, 22524893 - 22524758
Alignment:
Q  128 acaacaaagatggaatgattctactcaattaactttttaggattaaaagtggatatcaagatcgtaaaacataatatcgcaaccataatcgaagaatcgt 227  Q
    ||||| ||||| ||| ||||| |||||||||| ||| ||||||  |||| ||| | |||||||||||||||| | ||| ||||||  ||| ||| ||| |    
T  22524893 acaaccaagatcgaaggattcaactcaattaattttgtaggatcgaaaggggacagcaagatcgtaaaacatgaaatcacaaccaagatcaaaggatcct 22524794  T
Q  228 accaaaacaaaaatagtacaaaacatatattatata 263  Q
    ||||||||||||||| ||| ||| ||||||||||||    
T  22524793 accaaaacaaaaataatactaaatatatattatata 22524758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 36991584 - 36991517
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||| |||||||||| || |||||||    
T  36991584 aaaatattcattttttatgcatttttaatatgtttccttccacatgtttagtgaactcttgatctcat 36991517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 15905038 - 15905119
Alignment:
Q  184 caagatcgtaaaacataatatcgcaaccataatcgaagaatcgtaccaaaacaaaaatagtacaaaacatatattatataaa 265  Q
    ||||||| |||||||||| ||||||||||  ||  ||| ||| |||| ||||||||||| ||| ||| ||||||||||||||    
T  15905038 caagatcataaaacataaaatcgcaaccaagatttaaggatcttacctaaacaaaaataatactaaatatatattatataaa 15905119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 325
Target Start/End: Original strand, 16308563 - 16308624
Alignment:
Q  264 aaggattaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtccctttatc 325  Q
    |||| ||||||| ||||||||||  ||||||||||| ||||||| |||||||||||| ||||    
T  16308563 aaggcttaaatatgtaaatcgtccctgtaagttcgcgtgtttttggttttcgtccctgtatc 16308624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 21604738 - 21604791
Alignment:
Q  61 atattcatttttcatgcattttttataggtttccttccacatgcttagtgaact 114  Q
    |||||||||||| |||||||||| ||| |||| |||||||||| ||||||||||    
T  21604738 atattcattttttatgcatttttaatatgttttcttccacatgtttagtgaact 21604791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 27756841 - 27756785
Alignment:
Q  269 ttaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtccctttatc 325  Q
    ||||||| ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  27756841 ttaaatatgtaaatcgtccctctaagttcgcgtgttttttgttttcgtccctgtatc 27756785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 2500249 - 2500315
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| |||||||    
T  2500249 aaaatattcattttt-atgcatttttaatatgtttccttccacatgcttagtgaacttttgatctcat 2500315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 263
Target Start/End: Complemental strand, 52388198 - 52388083
Alignment:
Q  148 ctactcaattaactttttaggattaaaagtggatatcaagatcgtaaaacataatatcgcaaccataatcgaagaatcgtaccaaaacaaaaatagtaca 247  Q
    |||||||||||||||| ||||||  |||| ||||| |||||||||||||||||  ||||||||||  || |||| ||| |||| ||| ||||||| |||     
T  52388198 ctactcaattaactttgtaggatcgaaagaggatagcaagatcgtaaaacatagaatcgcaaccaggattgaaggatcctacctaaataaaaataatact 52388099  T
Q  248 aaacatatattatata 263  Q
    ||| ||||||||||||    
T  52388098 aaaaatatattatata 52388083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 46092841 - 46092774
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||| |||||||||| || |||||||    
T  46092841 aaaatattcattttttatgcatttttaatatgtttccttccacatgtttagtgaactcttgatctcat 46092774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 53830110 - 53830177
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||| |||||||||| || |||||||    
T  53830110 aaaatattcattttttatgcatttttaatatgtttccttccacatgtttagtgaactcttgatctcat 53830177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 41021848 - 41021945
Alignment:
Q  145 attctactcaattaactttttaggattaaaagtggatatcaagatcgtaaaacataatatcgcaaccataatcgaagaatcgtaccaaaacaaaaata 242  Q
    ||||||||||||||| ||| ||||||  | || ||||| ||||||| |||||||||| |||||||||| | | |||| ||| ||||||||||||||||    
T  41021848 attctactcaattaattttgtaggatctagaggggatagcaagatcataaaacataaaatcgcaaccaaatttgaaggatcctaccaaaacaaaaata 41021945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 2504600 - 2504667
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||| | |||||||| || |||||||    
T  2504600 aaaatattcattttttatgcatttttaatatgtttccttccacatgttcagtgaactcttgatctcat 2504667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 10664868 - 10664917
Alignment:
Q  78 attttttataggtttccttccacatgcttagtgaacttttcatctcatca 127  Q
    |||||| |||||||||||||||||||||||||||||| || |||||||||    
T  10664868 atttttaataggtttccttccacatgcttagtgaactcttaatctcatca 10664917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 10714317 - 10714272
Alignment:
Q  82 tttataggtttccttccacatgcttagtgaacttttcatctcatca 127  Q
    ||||||||||||||||||||||||||||||||| || |||||||||    
T  10714317 tttataggtttccttccacatgcttagtgaactcttaatctcatca 10714272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 10879013 - 10879062
Alignment:
Q  78 attttttataggtttccttccacatgcttagtgaacttttcatctcatca 127  Q
    |||||| |||||||||||||||||||||||||||||| || |||||||||    
T  10879013 atttttaataggtttccttccacatgcttagtgaactcttaatctcatca 10879062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 10928087 - 10928042
Alignment:
Q  82 tttataggtttccttccacatgcttagtgaacttttcatctcatca 127  Q
    ||||||||||||||||||||||||||||||||| || |||||||||    
T  10928087 tttataggtttccttccacatgcttagtgaactcttaatctcatca 10928042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 54800825 - 54800882
Alignment:
Q  50 aaatgaataaaatattcatttttcatgcattttttataggtttccttccacatgctta 107  Q
    |||||||||||||||| ||||||  ||||||||||||| |||| ||||||||||||||    
T  54800825 aaatgaataaaatattaattttttgtgcattttttatatgttttcttccacatgctta 54800882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 20036777 - 20036711
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    |||||||| |||||| |||||||||| ||| ||||||||||||||| |||||||||| || |||||||    
T  20036777 aaaatatt-attttttatgcatttttaatatgtttccttccacatgtttagtgaactcttgatctcat 20036711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 54534981 - 54535032
Alignment:
Q  269 ttaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtccct 320  Q
    ||||||| |||||||||| |||||||||||| ||||||| ||||||||||||    
T  54534981 ttaaatatgtaaatcgtccatgtaagttcgcgtgtttttggttttcgtccct 54535032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 23312864 - 23312977
Alignment:
Q  128 acaacaaagatggaatgattctactcaattaactttttaggattaaaagtg-gatatcaagatcgtaaaacataatatcgcaaccataatcgaagaatcg 226  Q
    ||||| ||||| | |||||||||||||||||| ||| | ||||  || ||| ||||  ||||| ||||||||||| ||||||||||  ||||||| |||     
T  23312864 acaaccaagatcggatgattctactcaattaattttgtcggatcgaa-gtgtgatagtaagattgtaaaacataaaatcgcaaccaagatcgaaggatcc 23312962  T
Q  227 taccaaaacaaaaat 241  Q
    |||||||||||||||    
T  23312963 taccaaaacaaaaat 23312977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 5431242 - 5431175
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    |||||||||||| || |||| ||||| ||| ||||| ||||||||| |||||||||| || |||||||    
T  5431242 aaaatattcattgtttatgcttttttaatatgtttcgttccacatgtttagtgaactcttgatctcat 5431175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 42889872 - 42889817
Alignment:
Q  263 aaaggattaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtcc 318  Q
    ||||| ||||||| ||||||||||  ||||||||| | ||||||||||||||||||    
T  42889872 aaaggcttaaatatgtaaatcgtccctgtaagttcacgtgttttttgttttcgtcc 42889817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 1393401 - 1393352
Alignment:
Q  79 ttttttataggtttccttccacatgcttagtgaacttttcatctcatcaa 128  Q
    ||||||||| ||||||||||||||||||| ||| || || ||||||||||    
T  1393401 ttttttatatgtttccttccacatgcttaatgagctcttgatctcatcaa 1393352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 19200562 - 19200449
Alignment:
Q  129 caacaaagatggaatgattctactcaattaactttttaggattaaaagtggatatcaagatcgtaaaacataatatcgcaaccataatcgaagaatcgta 228  Q
    |||| ||||| ||| |||||| | ||||||| ||| |||||| |||||  | ||||||||||||||||||||| || ||||  |   || ||| ||| ||    
T  19200562 caaccaagatcgaaggattcttcccaattaattttgtaggatcaaaagacggtatcaagatcgtaaaacataaaattgcaattaaggtcaaaggatccta 19200463  T
Q  229 ccaaaacaaaaata 242  Q
    ||||||||||||||    
T  19200462 ccaaaacaaaaata 19200449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 21632390 - 21632447
Alignment:
Q  68 tttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    ||||| ||| |||||| ||| ||||||||||||||| |||||||||| || |||||||    
T  21632390 ttttttatggatttttaatatgtttccttccacatgtttagtgaactctttatctcat 21632447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 21803418 - 21803361
Alignment:
Q  68 tttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    ||||| ||| |||||| ||| ||||||||||||||| |||||||||| || |||||||    
T  21803418 ttttttatggatttttaatatgtttccttccacatgtttagtgaactctttatctcat 21803361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 38157017 - 38157074
Alignment:
Q  263 aaaggattaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtccct 320  Q
    ||||| ||||||| ||||||| ||  ||||||||||| ||||||| ||||||||||||    
T  38157017 aaaggtttaaatatgtaaatcatccctgtaagttcgcgtgtttttggttttcgtccct 38157074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 42977188 - 42977257
Alignment:
Q  256 attatataaaggattaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtccctttatc 325  Q
    ||||| |||||| ||||||| ||||||||||  ||||| || || ||||||| |||||||||||| ||||    
T  42977188 attatttaaaggcttaaatatgtaaatcgtccttgtaatttggcgtgtttttggttttcgtccctgtatc 42977257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 52388246 - 52388202
Alignment:
Q  178 ggatatcaagatcgtaaaacataatatcgcaaccataatcgaaga 222  Q
    ||||| |||||||||||||||||| ||||||||||  ||||||||    
T  52388246 ggatagcaagatcgtaaaacataagatcgcaaccaagatcgaaga 52388202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 918594 - 918660
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctca 124  Q
    ||||||||||||||| |||||||||| ||| |||||||| |||||| |||||||||| || ||||||    
T  918594 aaaatattcattttttatgcatttttaatatgtttccttacacatgtttagtgaactcttgatctca 918660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 35689986 - 35690036
Alignment:
Q  78 attttttataggtttccttccacatgcttagtgaacttttcatctcatcaa 128  Q
    ||||||||||||||||||||||||||||||||||| | || ||||||||||    
T  35689986 attttttataggtttccttccacatgcttagtgaaatcttgatctcatcaa 35690036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 15579421 - 15579494
Alignment:
Q  167 ggattaaaagtggatatcaagatcgtaaaacataatatcgcaaccataatcgaagaatcgtaccaaaacaaaaa 240  Q
    |||| ||||| ||||| |||||||||||||||||| ||||||||||  || ||||  || ||||||||||||||    
T  15579421 ggatcaaaaggggatagcaagatcgtaaaacataaaatcgcaaccaagattgaaggttcctaccaaaacaaaaa 15579494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 21361525 - 21361476
Alignment:
Q  78 attttttataggtttccttccacatgcttagtgaacttttcatctcatca 127  Q
    |||| |||||| ||||||||||||||||||||||||| || |||||||||    
T  21361525 atttcttatagttttccttccacatgcttagtgaactcttaatctcatca 21361476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 26048069 - 26048020
Alignment:
Q  78 attttttataggtttccttccacatgcttagtgaacttttcatctcatca 127  Q
    |||| |||||||||||||||||||||||||||||||| || || ||||||    
T  26048069 atttcttataggtttccttccacatgcttagtgaactcttgatttcatca 26048020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 3158093 - 3158037
Alignment:
Q  269 ttaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtccctttatc 325  Q
    ||||||| ||||||||||  ||||||||||| ||||||| |||||||||||| ||||    
T  3158093 ttaaatatgtaaatcgtccctgtaagttcgcgtgtttttggttttcgtccctgtatc 3158037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 25265961 - 25265905
Alignment:
Q  269 ttaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtccctttatc 325  Q
    ||||||| ||||||||||| ||||| || || |||||||||||||||||||| ||||    
T  25265961 ttaaatatgtaaatcgtctctgtaatttggcgtgttttttgttttcgtccctgtatc 25265905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 20172486 - 20172419
Alignment:
Q  58 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttcatctcat 125  Q
    |||||||| ||| || |||| ||||| ||| ||||||||||||||| |||||||||| || |||||||    
T  20172486 aaaatattaattgtttatgcttttttaatatgtttccttccacatgtttagtgaactcttgatctcat 20172419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 325
Target Start/End: Complemental strand, 33295515 - 33295445
Alignment:
Q  255 tattatataaaggattaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtccctttatc 325  Q
    |||| |||| ||| ||||||| ||||||||||| ||||| || || ||||||||||||| |||||| ||||    
T  33295515 tattttatataggcttaaatatgtaaatcgtctctgtaatttggcgtgttttttgtttttgtccctgtatc 33295445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 8335261 - 8335188
Alignment:
Q  189 tcgtaaaacataatatcgcaaccataatcgaagaatcgtaccaaaacaaaaatagtacaaaacatatattatat 262  Q
    ||||||||||||| ||||||| ||  ||| ||| ||| |||||||||||||||  ||| ||| |||||||||||    
T  8335261 tcgtaaaacataaaatcgcaatcaagatcaaaggatcctaccaaaacaaaaatgatactaaaaatatattatat 8335188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Original strand, 26719396 - 26719437
Alignment:
Q  277 gtaaatcgtctatgtaagttcgcttgttttttgttttcgtcc 318  Q
    ||||||| || |||||||||||| ||||||||||||||||||    
T  26719396 gtaaatcatccatgtaagttcgcgtgttttttgttttcgtcc 26719437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 5461937 - 5461985
Alignment:
Q  269 ttaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtc 317  Q
    ||||||| ||||||||||   |||||||||| |||||||||||||||||    
T  5461937 ttaaatatgtaaatcgtcaccgtaagttcgcgtgttttttgttttcgtc 5461985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 15279689 - 15279641
Alignment:
Q  269 ttaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtc 317  Q
    ||||||| ||||||||||  ||||||||||| ||||||| |||||||||    
T  15279689 ttaaatatgtaaatcgtccttgtaagttcgcgtgtttttggttttcgtc 15279641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 15460058 - 15460010
Alignment:
Q  269 ttaaataggtaaatcgtctatgtaagttcgcttgttttttgttttcgtc 317  Q
    ||||||| ||||||||||  ||||||||||| ||||||| |||||||||    
T  15460058 ttaaatatgtaaatcgtccttgtaagttcgcgtgtttttggttttcgtc 15460010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 19388131 - 19388083
Alignment:
Q  79 ttttttataggtttccttccacatgcttagtgaacttttcatctcatca 127  Q
    ||||||||| |||||||||||||||||||  ||||| || |||||||||    
T  19388131 ttttttataagtttccttccacatgcttacggaactcttgatctcatca 19388083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 32980010 - 32979946
Alignment:
Q  178 ggatatcaagatcgtaaaacataatatcgcaaccataatcgaagaatcgtaccaaaacaaaaata 242  Q
    ||||| |||||||||||||||| | |||||||||   || |||| ||| ||||||||||||||||    
T  32980010 ggatagcaagatcgtaaaacattagatcgcaacccagattgaaggatcataccaaaacaaaaata 32979946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 3775 - 3735
Alignment:
Q  74 atgcattttttataggtttccttccacatgcttagtgaact 114  Q
    |||||||||||||| ||||||||||||||| ||||||||||    
T  3775 atgcattttttatatgtttccttccacatgtttagtgaact 3735  T

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Target: scaffold0076 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 54575 - 54535
Alignment:
Q  88 ggtttccttccacatgcttagtgaacttttcatctcatcaa 128  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  54575 ggtttccttccacatgcttaatgaacttttgatctcatcaa 54535  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 136099 - 136051
Alignment:
Q  79 ttttttataggtttccttccacatgcttagtgaacttttcatctcatca 127  Q
    ||||||||| ||||||||||||||||||| ||| || || |||||||||    
T  136099 ttttttatatgtttccttccacatgcttaatgagctcttgatctcatca 136051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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