View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7890_low_8 (Length: 320)

Name: NF7890_low_8
Description: NF7890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7890_low_8
NF7890_low_8
[»] chr7 (9 HSPs)
chr7 (161-320)||(42513126-42513285)
chr7 (161-308)||(38572287-38572434)
chr7 (205-304)||(41712265-41712364)
chr7 (209-320)||(49017102-49017213)
chr7 (234-320)||(30456307-30456392)
chr7 (262-320)||(11206499-11206557)
chr7 (234-320)||(30452702-30452783)
chr7 (260-315)||(6102928-6102983)
chr7 (122-155)||(38572462-38572495)
[»] chr5 (5 HSPs)
chr5 (161-320)||(8123455-8123614)
chr5 (1-119)||(4287449-4287567)
chr5 (161-320)||(671389-671548)
chr5 (234-319)||(24108697-24108783)
chr5 (257-320)||(41709523-41709586)
[»] chr3 (7 HSPs)
chr3 (161-320)||(30911982-30912141)
chr3 (184-320)||(36326442-36326576)
chr3 (163-314)||(55211759-55211905)
chr3 (161-315)||(32414663-32414821)
chr3 (122-155)||(30911921-30911954)
chr3 (248-320)||(33328218-33328290)
chr3 (120-156)||(55211934-55211970)
[»] chr1 (4 HSPs)
chr1 (161-320)||(18583950-18584109)
chr1 (234-320)||(23405539-23405625)
chr1 (161-224)||(13087634-13087696)
chr1 (257-299)||(13087701-13087743)
[»] chr6 (6 HSPs)
chr6 (161-320)||(4834644-4834805)
chr6 (161-320)||(7415566-7415725)
chr6 (161-314)||(33242776-33242928)
chr6 (164-320)||(7426516-7426672)
chr6 (177-320)||(7422590-7422733)
chr6 (161-231)||(13886515-13886585)
[»] chr2 (3 HSPs)
chr2 (161-276)||(31211616-31211731)
chr2 (234-314)||(45327474-45327554)
chr2 (280-320)||(31211859-31211899)
[»] chr4 (8 HSPs)
chr4 (161-274)||(20441029-20441141)
chr4 (234-314)||(27387620-27387700)
chr4 (260-320)||(24733642-24733702)
chr4 (122-157)||(36050519-36050554)
chr4 (122-157)||(36053778-36053813)
chr4 (252-320)||(55322398-55322467)
chr4 (243-314)||(36050673-36050743)
chr4 (243-314)||(36053932-36054002)
[»] chr8 (2 HSPs)
chr8 (243-320)||(44761976-44762053)
chr8 (243-320)||(44765283-44765360)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 161 - 320
Target Start/End: Complemental strand, 42513285 - 42513126
Alignment:
Q  161 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 260  Q
    ||||||||||||| |||||||||||||||||||| | |||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  42513285 atgactcaccttaatctagaaggatctagaaggtctattgttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtc 42513186  T
Q  261 tatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||    
T  42513185 tatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttc 42513126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 161 - 308
Target Start/End: Complemental strand, 38572434 - 38572287
Alignment:
Q  161 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 260  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||||| ||||||||| ||||| ||||||    
T  38572434 atgactcaccttaatctaaaaggatctagaaggtatcttgttaggggataatattgagtaagttagggtacacttatcttattatgaatatgcccaagtc 38572335  T
Q  261 tatataagcattgtatgttttattatgagaatgaatgaataatataat 308  Q
    ||||||| |||||||||  ||||||||||||| ||| || ||||||||    
T  38572334 tatataaacattgtatgccttattatgagaattaataaaaaatataat 38572287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 304
Target Start/End: Original strand, 41712265 - 41712364
Alignment:
Q  205 gggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataata 304  Q
    ||||| ||||| |||||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| ||||    
T  41712265 gggataatattaagtatgttagggtgcacttattttattatgagtaggcacaagtctatataagtattgtatgtcttattatgagaatgaatgaaaaata 41712364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 49017102 - 49017213
Alignment:
Q  209 tgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataat 308  Q
    ||||||||||||||||  | ||||||||| ||||||||| ||| ||||||| | |||||||||||||||  ||||||||||| | |||||| ||||||||    
T  49017102 tgatattgagtatgttatgatgcacttatcttattatgactatccacaagtttgtataagcattgtatgccttattatgagacttaatgaaaaatataat 49017201  T
Q  309 gaattttctttc 320  Q
      ||||||||||    
T  49017202 atattttctttc 49017213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 320
Target Start/End: Original strand, 30456307 - 30456392
Alignment:
Q  234 ttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    |||| |||||||||||||||| ||||||||||||||||| ||||  |||| || |||| ||||||| ||||||||||||||||||||    
T  30456307 ttatcttattatgagtatgca-aagtctatataagcattatatgccttatgattagaacgaatgaaaaatataatgaattttctttc 30456392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 11206499 - 11206557
Alignment:
Q  262 atataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    |||||| |||||||||  ||||||||||||| |||||| ||||||||||||||||||||    
T  11206499 atataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttc 11206557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 320
Target Start/End: Original strand, 30452702 - 30452783
Alignment:
Q  234 ttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    |||| |||||||||||||||| |||||||||||    |||||||  |||| || |||| ||||||| ||||||||||||||||||||    
T  30452702 ttatcttattatgagtatgca-aagtctatata----ttgtatgccttatgattagaacgaatgaaaaatataatgaattttctttc 30452783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 6102928 - 6102983
Alignment:
Q  260 ctatataagcattgtatgttttattatgagaatgaatgaataatataatgaatttt 315  Q
    ||||||||||||||||| ||| || || ||||| |||||| |||||||||||||||    
T  6102928 ctatataagcattgtatctttcatgattagaatcaatgaaaaatataatgaatttt 6102983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 38572495 - 38572462
Alignment:
Q  122 tgataggatatttagaataatgagtactaatgtg 155  Q
    |||||| |||||||||||||||||||||||||||    
T  38572495 tgatagtatatttagaataatgagtactaatgtg 38572462  T

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Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 161 - 320
Target Start/End: Original strand, 8123455 - 8123614
Alignment:
Q  161 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 260  Q
    |||||| |||||| |||||||||||||||||| | | |||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  8123455 atgactgaccttaatctagaaggatctagaagatctattgttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtc 8123554  T
Q  261 tatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||    
T  8123555 tatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttc 8123614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 4287449 - 4287567
Alignment:
Q  1 tcaaatctatatgtttaacgattaaattgttttccggaaatatttggagaagattagtttctacattgttaaagataatagaaaaagagagtaacaatat 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4287449 tcaaatctatatgtttaacgattgaattgttttccggaaatatttggagaagaatagtttctacattgttaaagataatagaaaaagagagtaacaatat 4287548  T
Q  101 tttttacttaactactact 119  Q
    |||||||||||||||||||    
T  4287549 tttttacttaactactact 4287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 161 - 320
Target Start/End: Original strand, 671389 - 671548
Alignment:
Q  161 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 260  Q
    ||||||||||||| |||||||||||| | ||| ||| |||||||||||| |||||||||| ||| |||| ||||||| |||||||||||||||||||||     
T  671389 atgactcaccttaatctagaaggatccataagatatattgttaggggataatattgagtaggttagggtacacttatcttattatgagtatgcacaagtt 671488  T
Q  261 tatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    ||||||| |||||||||  ||||||||||||| |||||| ||||||||||||||||||||    
T  671489 tatataatcattgtatgccttattatgagaattaatgaaaaatataatgaattttctttc 671548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 24108697 - 24108783
Alignment:
Q  234 ttatgttattatgagtatgca-caagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttcttt 319  Q
    |||| |||||||||||||||| |||||||||||||||||||||||| |||| || ||||  |||||| |||||||||||||| ||||    
T  24108697 ttattttattatgagtatgcaacaagtctatataagcattgtatgtcttatgattagaaccaatgaaaaatataatgaatttccttt 24108783  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 41709523 - 41709586
Alignment:
Q  257 agtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    ||||||||||| |||||||||  ||||||||||||| |||||| ||||||||||||||||||||    
T  41709523 agtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttc 41709586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 161 - 320
Target Start/End: Original strand, 30911982 - 30912141
Alignment:
Q  161 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 260  Q
    ||||||||||||| |||||||||||||| ||  |||||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||||    
T  30911982 atgactcaccttaatctagaaggatctaaaatatatcttgttaggggataatattgagtatgttagggtgcacttattttattgtgagtatgcacaagtc 30912081  T
Q  261 tatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    |||||||| ||||||||  ||||||||||||| |||||| ||||||||||||||||||||    
T  30912082 tatataagtattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttc 30912141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 184 - 320
Target Start/End: Original strand, 36326442 - 36326576
Alignment:
Q  184 atctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtatgttttat 283  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||  ||||||||||||||||||||||| |||||    
T  36326442 atctagaaggtatcttgttaggggatgatattgagtatgttagggtgcacttaggttattatgagtatg--caagtctatataagcattgtatgctttat 36326539  T
Q  284 tatgagaatgaatgaataatataatgaattttctttc 320  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  36326540 tatgagaatcaatgaaaaatataatgaattttctttc 36326576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 163 - 314
Target Start/End: Complemental strand, 55211905 - 55211759
Alignment:
Q  163 gactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtcta 262  Q
    |||||| |||| |||| ||||||| | ||||||| ||| |||||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  55211905 gactcatcttaatctaaaaggatccataaggtatattggtaggggataatattgagtatgttagggtgcacttatcttattatgaatatgcacaagtcta 55211806  T
Q  263 tataagcattgtatgttttattatgagaatgaatgaataatataatgaattt 314  Q
    |||     |||||||  ||||||||||||| |||||| ||||||||||||||    
T  55211805 tat-----ttgtatgccttattatgagaatcaatgaaaaatataatgaattt 55211759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 315
Target Start/End: Original strand, 32414663 - 32414821
Alignment:
Q  161 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgc----aca 256  Q
    |||||||||||||  ||| ||||||||||||||||| ||||  |||||| ||||| ||||||||  ||||||||||| ||||| ||||| |||    |||    
T  32414663 atgactcaccttaacctataaggatctagaaggtatattgtctggggataatattaagtatgttatggtgcacttatcttattttgagtttgcacaaaca 32414762  T
Q  257 agtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaatttt 315  Q
    ||||||||||| |||||||||  |||||| |||||| ||| || |||||||||| ||||    
T  32414763 agtctatataaacattgtatgccttattacgagaatcaataaaaaatataatgattttt 32414821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 30911921 - 30911954
Alignment:
Q  122 tgataggatatttagaataatgagtactaatgtg 155  Q
    |||||||||| |||||||||||||||||||||||    
T  30911921 tgataggatacttagaataatgagtactaatgtg 30911954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 33328218 - 33328290
Alignment:
Q  248 gtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    ||||||| |||||| ||||||||||||||| ||||| || ||||  ||||||  ||||||| ||||| |||||    
T  33328218 gtatgcataagtctgtataagcattgtatgctttataattagaaccaatgaaagatataatcaatttcctttc 33328290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 55211970 - 55211934
Alignment:
Q  120 actgataggatatttagaataatgagtactaatgtgg 156  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  55211970 actgataggatatttagaataaggagcactaatgtgg 55211934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 161 - 320
Target Start/End: Complemental strand, 18584109 - 18583950
Alignment:
Q  161 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 260  Q
    ||||||||||||| |||||||||||||| ||||||| || ||||||||| |||||||||||||| ||||||| ||||  |||||| ||||||||||||||    
T  18584109 atgactcaccttaatctagaaggatctaaaaggtatattattaggggataatattgagtatgttagggtgcagttatcgtattataagtatgcacaagtc 18584010  T
Q  261 tatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||| ||||||| |||||    
T  18584009 tatataagcattgtatgctttattatgagaatcaatgaaaaatatactgaatttcctttc 18583950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 234 - 320
Target Start/End: Complemental strand, 23405625 - 23405539
Alignment:
Q  234 ttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    |||| ||| |||| |||||||||||||||| ||| |||||||||  ||||||||||||| |||||| ||||||||||||||||||||    
T  23405625 ttatcttactatgtgtatgcacaagtctatctaaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttc 23405539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 13087634 - 13087696
Alignment:
Q  161 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgtt 224  Q
    ||||||||||||| |||||| | ||||||||||||| |||||||||||| |||| |||||||||    
T  13087634 atgactcaccttaatctagacg-atctagaaggtatattgttaggggataatatcgagtatgtt 13087696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 13087701 - 13087743
Alignment:
Q  257 agtctatataagcattgtatgttttattatgagaatgaatgaa 299  Q
    |||||||||||| ||||||||  ||||||||||||||||||||    
T  13087701 agtctatataagtattgtatgccttattatgagaatgaatgaa 13087743  T

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Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 161 - 320
Target Start/End: Original strand, 4834644 - 4834805
Alignment:
Q  161 atgactcaccttagtctagaaggatctagaagg--tatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaag 258  Q
    ||||||||||||| |||||||||||||| ||||  |||||| ||||||||| |||||||||||||| |||||||||||| |||||||||||||||| |||    
T  4834644 atgactcaccttaatctagaaggatctaaaaggagtatcttattaggggataatattgagtatgttagggtgcacttatcttattatgagtatgcataag 4834743  T
Q  259 tctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    |||||||||||||||||||  | ||||| ||||| |||||| ||||||||||||||||||||    
T  4834744 tctatataagcattgtatgcctcattattagaatcaatgaaaaatataatgaattttctttc 4834805  T

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Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 161 - 320
Target Start/End: Original strand, 7415566 - 7415725
Alignment:
Q  161 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 260  Q
    |||||||| |||| | |||||||||||||||  |||||||||||||||| ||||||||||||||  ||||||||||| ||||||||||||  || |||||    
T  7415566 atgactcatcttaatttagaaggatctagaaattatcttgttaggggataatattgagtatgttatggtgcacttatcttattatgagtacacataagtc 7415665  T
Q  261 tatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    |||||||||||||||||  ||||||||||||| |||||| ||||||||||||||||||||    
T  7415666 tatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttc 7415725  T

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Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 161 - 314
Target Start/End: Original strand, 33242776 - 33242928
Alignment:
Q  161 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 260  Q
    |||| ||| ||||||||| |||||| ||||||  || |||||||||||| |||||||||||||| || ||||||||| ||||||||||||||||||||||    
T  33242776 atgagtcatcttagtctataaggatttagaagacatattgttaggggataatattgagtatgttagg-tgcacttatcttattatgagtatgcacaagtc 33242874  T
Q  261 tatataagcattgtatgttttattatgagaatgaatgaataatataatgaattt 314  Q
    |||||||||||||||||  ||||||||||||| |||||| ||||||||||||||    
T  33242875 tatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaattt 33242928  T

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Target: chr6; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 164 - 320
Target Start/End: Original strand, 7426516 - 7426672
Alignment:
Q  164 actcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtctat 263  Q
    ||||| |||| ||||| |||||||||||| |||||||||||||||| ||||||||||||||  ||||||||||| |||||| |||||  || ||||||||    
T  7426516 actcatcttaatctagtaggatctagaagttatcttgttaggggataatattgagtatgttatggtgcacttatcttattaagagtacacataagtctat 7426615  T
Q  264 ataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    |||| |||||||||  ||||||||||||| |||||| ||||||||||||||||||||    
T  7426616 ataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttc 7426672  T

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Target: chr6; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 177 - 320
Target Start/End: Original strand, 7422590 - 7422733
Alignment:
Q  177 tagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcattgtat 276  Q
    |||||||||||||||| |||||||||||||||| | ||||||||||||  ||||||||||| |||||| |||||  || |||||||||||||||||||||    
T  7422590 tagaaggatctagaagttatcttgttaggggataacattgagtatgttatggtgcacttatcttattaagagtacacataagtctatataagcattgtat 7422689  T
Q  277 gttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    |  ||||||||||||| |||||| ||||||||||||||||||||    
T  7422690 gccttattatgagaatcaatgaaaaatataatgaattttctttc 7422733  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 13886515 - 13886585
Alignment:
Q  161 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgc 231  Q
    ||||||||||||| ||||||| |||||| ||||||| |||||| ||| | ||||| |||||||| ||||||    
T  13886515 atgactcaccttaatctagaaagatctaaaaggtatattgttaaggggtaatattaagtatgttagggtgc 13886585  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 276
Target Start/End: Original strand, 31211616 - 31211731
Alignment:
Q  161 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 260  Q
    ||||||||| ||| ||||||||||| |||||| ||| |||||||||||| |||||||||||||| | |||||||||| ||| |||||||||||| |||||    
T  31211616 atgactcactttaatctagaaggatttagaagatatattgttaggggataatattgagtatgttagagtgcacttatcttaatatgagtatgcataagtc 31211715  T
Q  261 tatataagcattgtat 276  Q
    |||||||| |||||||    
T  31211716 tatataagtattgtat 31211731  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 45327554 - 45327474
Alignment:
Q  234 ttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattt 314  Q
    |||| ||| |||| ||||||||||||||||||||||||||||||| ||||||||||||  |||||| |||||||| |||||    
T  45327554 ttatcttactatgtgtatgcacaagtctatataagcattgtatgtcttattatgagaaaaaatgaaaaatataataaattt 45327474  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 31211859 - 31211899
Alignment:
Q  280 ttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  31211859 ttattatgagaatcaatgaaaaatataatgaattttctttc 31211899  T

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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 161 - 274
Target Start/End: Complemental strand, 20441141 - 20441029
Alignment:
Q  161 atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc 260  Q
    ||||||||||||| | |||||| ||||| || |||| |||||| ||||| |||||||| ||||  |||||||||||| ||||||||||||||||||||||    
T  20441141 atgactcaccttaatttagaag-atctaaaaagtatattgttaagggataatattgagcatgtcagggtgcacttatcttattatgagtatgcacaagtc 20441043  T
Q  261 tatataagcattgt 274  Q
    | || |||||||||    
T  20441042 tgtacaagcattgt 20441029  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 27387620 - 27387700
Alignment:
Q  234 ttatgttattatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattt 314  Q
    |||| |||||| ||| ||||||||||||||||||||||||||||  | ||||| || | ||||||| ||||||||||||||    
T  27387620 ttatcttattacgaggatgcacaagtctatataagcattgtatgcctcattattagcaggaatgaaaaatataatgaattt 27387700  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 24733642 - 24733702
Alignment:
Q  260 ctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    ||||||||||||||||||||| || || |||| ||||||| |||||||||||||| |||||    
T  24733642 ctatataagcattgtatgtttcatgattagaaggaatgaaaaatataatgaatttcctttc 24733702  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 36050519 - 36050554
Alignment:
Q  122 tgataggatatttagaataatgagtactaatgtggt 157  Q
    ||||||||||||||||||||||||||||||||||||    
T  36050519 tgataggatatttagaataatgagtactaatgtggt 36050554  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 36053778 - 36053813
Alignment:
Q  122 tgataggatatttagaataatgagtactaatgtggt 157  Q
    ||||||||||||||||||||||||||||||||||||    
T  36053778 tgataggatatttagaataatgagtactaatgtggt 36053813  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 320
Target Start/End: Complemental strand, 55322467 - 55322398
Alignment:
Q  252 gcacaagtctatataagcattgtatgttttattatgagaatgaatgaataat-ataatgaattttctttc 320  Q
    ||||||||||||||||||||||||||  | ||||| || ||||||||| ||| ||||||||||| |||||    
T  55322467 gcacaagtctatataagcattgtatgcctcattattaggatgaatgaaaaataataatgaatttcctttc 55322398  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 36050673 - 36050743
Alignment:
Q  243 tatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattt 314  Q
    |||| |||||||||||||||||||| |||||||||  ||||||||||    |||||| ||||||||||||||    
T  36050673 tatgtgtatgcacaagtctatataaacattgtatgccttattatgag-ggaaatgaaaaatataatgaattt 36050743  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 36053932 - 36054002
Alignment:
Q  243 tatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattt 314  Q
    |||| |||||||||||||||||||| |||||||||  ||||||||||    |||||| ||||||||||||||    
T  36053932 tatgtgtatgcacaagtctatataaacattgtatgccttattatgag-ggaaatgaaaaatataatgaattt 36054002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 320
Target Start/End: Original strand, 44761976 - 44762053
Alignment:
Q  243 tatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    |||| |||||||||||||||||||| |||||||||  ||||||||| ||| |||||| ||||||||||||||| ||||    
T  44761976 tatgtgtatgcacaagtctatataaacattgtatgccttattatgaaaatcaatgaaaaatataatgaattttttttc 44762053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 320
Target Start/End: Original strand, 44765283 - 44765360
Alignment:
Q  243 tatgagtatgcacaagtctatataagcattgtatgttttattatgagaatgaatgaataatataatgaattttctttc 320  Q
    |||| |||||||||||||||||||| ||||||||   ||||||||| ||| |||||| ||||||||||||||||||||    
T  44765283 tatgtgtatgcacaagtctatataaacattgtattccttattatgaaaatcaatgaaaaatataatgaattttctttc 44765360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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