View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7890_low_9 (Length: 299)
Name: NF7890_low_9
Description: NF7890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7890_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 1572460 - 1572736
Alignment:
| Q |
8 |
aagcattgagtggttcaaaagagataactcaacgtttcagggtgttcaaaaatttcagcgtgtatttcaagtaatgttctcaatgttttgacgattgccc |
107 |
Q |
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| T |
1572460 |
aagcattgagtggttcaaaagagataactcaacgtttcagggtgttcaaaaatttcagcgtgtatttcaagtaatgttctcaatgttttgacgattgccc |
1572559 |
T |
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| Q |
108 |
ctcaattttgcatttttctctgtttctttgcttcccaaatttacatcaccttcacctcatttctctattcttagggagtgcaacatttgagtttggtacc |
207 |
Q |
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| T |
1572560 |
ctcaattttgcatttttctctgttactttgcttcccaaatttacatcaccttcacctcatttctctattcttagggagtgcaacatttgagtttggtacc |
1572659 |
T |
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| Q |
208 |
aatacaaattaaatcgatgataattggtttgtttcagttgttgggttcatctaaaaatcgattgaatagttgatctt |
284 |
Q |
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| T |
1572660 |
gatacaaattaaatcgatgataattggtttgtttcagttgttgcgttaatctaaaaatcgattgaatagttgatctt |
1572736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 1097334 - 1097481
Alignment:
| Q |
57 |
aaatttcagcgtgtatttcaagtaatgttctcaatgttttgacgattgcccctcaattttgcatttttctctgtttctttgcttcccaaatttacatcac |
156 |
Q |
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| T |
1097334 |
aaatttcagcgtgtatttcaagtaatgttctcaatgttttgatgattgcccctcaattttgcatttttccctgtttctttgcttcacaaatttacatcac |
1097433 |
T |
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| Q |
157 |
cttcacctcatttctctattcttagggagtgcaacatttgagtttggt |
204 |
Q |
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| T |
1097434 |
cttcacctcatttctctattcttagggagtgcaacatttgagtttggt |
1097481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 1100530 - 1100607
Alignment:
| Q |
127 |
ctgtttctttgcttcccaaatttacatcaccttcacctcatttctctattcttagggagtgcaacatttgagtttggt |
204 |
Q |
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|||||||| |||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||| || |||||||| |
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| T |
1100530 |
ctgtttctctgcttcacaaatttacatcaccttcacctctttgctctattcttagggaatgcaacagttcagtttggt |
1100607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 1100684 - 1100754
Alignment:
| Q |
205 |
accaatacaaattaaatcgatgataattggtttgtttcagttgttgggttcatctaaaaatcgattgaata |
275 |
Q |
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| T |
1100684 |
accaatacaaactaaatcgacgatatttggtttgtttcagttgaccagttcatctaaaattcgattgaata |
1100754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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