View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7891_high_3 (Length: 469)
Name: NF7891_high_3
Description: NF7891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7891_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 215 - 459
Target Start/End: Original strand, 52981770 - 52982012
Alignment:
| Q |
215 |
catcattagatgtttcttgcaccgcaaacaaagacttgaagctttaaatctattaactaagaactccttaaggatctaagttaggtcctaaattgatcat |
314 |
Q |
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| T |
52981770 |
catcattagatgtttcttgcaccgcaaacaaagacttgaagctttaaatctattaactaagaactccttaaggatctaagttaggtcctaaattgatcat |
52981869 |
T |
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| Q |
315 |
cgagtttatttattaaaagaatgtttttctccgtcaacatacatttagattaatagnnnnnnnnnnnngttgaaagaatttagattaatagttattgcct |
414 |
Q |
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| T |
52981870 |
cgagtttatttattaaaagaatgtttttctcggtcaacatacatttagattaatag--ttttttttttgttgaaagaatttagattaatagttattgcct |
52981967 |
T |
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| Q |
415 |
taagactttttgtttttgggtacaaatatgaaatatctctctctg |
459 |
Q |
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| T |
52981968 |
taagactttttgtttttgggtacaaatatgaaatatctctctctg |
52982012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 52981573 - 52981687
Alignment:
| Q |
18 |
caatttagttatgcaaaacttgcctactagattatacatcggtttgtataagataaaacatcttctaaaatgtaagatttgaatgatgtatgtaactcaa |
117 |
Q |
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| T |
52981573 |
caatttagttatgcaaaacttgcctactagattatacatcggtttgtataagataaaacatcttctaaaatgtaaaatttgaatgatgtatgtaactcaa |
52981672 |
T |
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| Q |
118 |
ccttgtttataatca |
132 |
Q |
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| T |
52981673 |
ccttgtttataatca |
52981687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 42059483 - 42059429
Alignment:
| Q |
220 |
ttagatgtttcttgcaccgcaaacaaagacttgaagctttaaatctattaactaa |
274 |
Q |
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| T |
42059483 |
ttaggtgtttcttgcaccgtaaactaagacttgaggctttaaatctattaactaa |
42059429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 328
Target Start/End: Complemental strand, 1868665 - 1868561
Alignment:
| Q |
224 |
atgtttcttgcaccgcaaacaaagacttgaagctttaaatctattaactaagaactccttaaggatctaagttaggtcctaaattgatcatcgagtttat |
323 |
Q |
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| T |
1868665 |
atgtttcttgcaccgcaaacatagacttgaggctttaaacatatcaactaaaaatctcttaaggatccaacttgagttttagattgatcatcgagttcat |
1868566 |
T |
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| Q |
324 |
ttatt |
328 |
Q |
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||||| |
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| T |
1868565 |
ttatt |
1868561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 1857461 - 1857376
Alignment:
| Q |
226 |
gtttcttgcaccgcaaacaaagacttgaagctttaaatctattaactaagaactccttaaggatctaagttaggtcctaaattgat |
311 |
Q |
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| T |
1857461 |
gtttcttgcaccgcaaacaaaaacttgagcttttaaacctgtaaattaagatctccttaagaatctaacctgggtcttaaattgat |
1857376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 1867988 - 1867932
Alignment:
| Q |
298 |
ggtcctaaattgatcatcgagtttatttattaaaagaatgtttttctccgtcaacat |
354 |
Q |
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| T |
1867988 |
ggtcctaaattgatcatcgagttcatttgttgaaagaagatttttattcgtcaacat |
1867932 |
T |
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