View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7891_low_1 (Length: 622)
Name: NF7891_low_1
Description: NF7891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7891_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 6e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 30 - 444
Target Start/End: Complemental strand, 33856264 - 33855852
Alignment:
| Q |
30 |
gataatcaaaatagcattgaagggagatacaacgagtgtaagatgccatatcttatagtacaaacagactagattggtctgcatatgttcttgctacata |
129 |
Q |
| |
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||||||||||||||||||||| ||||||||||| || ||||||| |||| |||||| |||||||||||| |||| |||||||||||||||||||||||| |
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| T |
33856264 |
gataatcaaaatagcattgaacggagatacaacaagagtaagataccatttcttatggtacaaacagacaagatcagtctgcatatgttcttgctacata |
33856165 |
T |
|
| Q |
130 |
aaa-----gtaacatctctcaatgcaaagaactaaacctatattttaatagaattacaaatactaaaaattacaactatactcatttcctccgtgatctc |
224 |
Q |
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| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||||| ||| |
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| T |
33856164 |
acaagatagtaacatctctcaatgcaaagaactaaacctatattttaatagaattgcaaatattaaaaattactactatactcatttcttccgtgagctc |
33856065 |
T |
|
| Q |
225 |
agattcaatttacatagcaggtggtacgggtactttcctcataaag-aagacatgaaaaatgaaccctacgataaaaagttgcatatatccccaatttca |
323 |
Q |
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|||||||||||| | | || ||||||||||| ||||| || |||| ||||||||||||| ||||||| ||| |||||||| ||||||| |
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| T |
33856064 |
agattcaatttatacaaca----------gtactttcctcctaaagaaaaacattaaaaatgaaccct--gataaaatattgtatatatcctcaatttcc |
33855977 |
T |
|
| Q |
324 |
tcacaccaatactataagataacacttcaaagaaaac----aaaccaaagagaaagtttctagaagtttcccaatccttgcttcttctttttccaccaat |
419 |
Q |
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| T |
33855976 |
tcacaaagaaactataagataacacttcaaataaagcaattaaaccaaagggaaagtttctacaagttttccaatccttgcttctttcttctccaccaat |
33855877 |
T |
|
| Q |
420 |
aaggcaaaaaagaccaacatgcgaa |
444 |
Q |
| |
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||| || ||||||||||||||||| |
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| T |
33855876 |
aagataagaaagaccaacatgcgaa |
33855852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 460 - 506
Target Start/End: Complemental strand, 33855473 - 33855427
Alignment:
| Q |
460 |
agggttgccttaataaacacacaactattaacatataaatagcctgt |
506 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33855473 |
agggttgccttaataaatacacaactattaacatataaatagcctgt |
33855427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 7e-66; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 25999535 - 25999320
Alignment:
| Q |
30 |
gataatcaaaatagcattgaagggagatacaacgagtgtaagatgccatatcttatagtacaaacagactagattggtctgcatatgttcttgctacata |
129 |
Q |
| |
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||||||||||||||||||||| ||||||||||| || ||||||| | | |||||| |||||||||||| |||| ||||||||||| ||||||||||||| |
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| T |
25999535 |
gataatcaaaatagcattgaacggagatacaacaagagtaagatatcgtttcttatggtacaaacagacaagatcggtctgcatatattcttgctacata |
25999436 |
T |
|
| Q |
130 |
aaa-----gtaacatctctcaatgcaaagaactaaacctatattttaatagaattacaaatactaaaaattacaactatactcatttcctccgtgatctc |
224 |
Q |
| |
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| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||||| ||| |
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| T |
25999435 |
acaagatagtaacatctctcaatgcaaagaactaaacctatattttaatagaattgcaaatattaaaaattactactatactcatttcttccgtgagctc |
25999336 |
T |
|
| Q |
225 |
agattcaatttacata |
240 |
Q |
| |
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|||||||||||||||| |
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| T |
25999335 |
agattcaatttacata |
25999320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 105 - 444
Target Start/End: Complemental strand, 26099252 - 26098915
Alignment:
| Q |
105 |
ggtctgcatatgttcttgctacataaaa-----gtaacatctctcaatgcaaagaactaaacctatattttaatagaattacaaatactaaaaattacaa |
199 |
Q |
| |
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|||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| | |
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| T |
26099252 |
ggtctgcatatgctcttgctacataacaagatagtaacatctctcaatgcaaagaactaaacctatattttaatagaattgaaaatattaaaaattacta |
26099153 |
T |
|
| Q |
200 |
ctatactcatttcctccgtgatctcagattcaatttacatagcaggtggtacgggtactttcctcataaag-aagacatgaaaaatgaaccctacgataa |
298 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||||||||| || ||||||||||| | ||| || |||| ||||||||||||| ||||| |
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| T |
26099152 |
ctatactcatttcttccgtgagctcagattcaatttacataaca----------gtactttcctcctgaagaaaaacattaaaaatgaaccct--gataa |
26099065 |
T |
|
| Q |
299 |
aaagttgcatatatccccaatttcatcacaccaatactataagataacacttcaaagaaaac----aaaccaaagagaaagtttctagaagtttcccaat |
394 |
Q |
| |
|
|| ||| |||||||| ||||||| ||||| | ||||||||||||||||||||| ||| | ||||||||| ||||||||||| |||||| | ||| |
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| T |
26099064 |
aatattgtatatatcctcaatttcctcacaaagaaactataagataacacttcaaataaagcaattaaaccaaagggaaagtttctacaagttttcaaat |
26098965 |
T |
|
| Q |
395 |
ccttgcttcttctttttccaccaataaggcaaaaaagaccaacatgcgaa |
444 |
Q |
| |
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||||||||||| || |||||||||||| || ||||||||||||||||| |
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| T |
26098964 |
ccttgcttctttcttctccaccaataagataagaaagaccaacatgcgaa |
26098915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 26099356 - 26099256
Alignment:
| Q |
30 |
gataatcaaaatagcattgaagggagatacaacgagtgtaagatgccatatcttatagtacaaacagactagattggtctgcatatgttcttgctacata |
129 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || ||||||| |||| |||||| |||||||||||| |||| ||||||||||||||||||||| ||| |
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| T |
26099356 |
gataatcaaaatagcattgaacggagatacaacaagagtaagataccatttcttatggtacaaacagacaagatcggtctgcatatgttcttgctatata |
26099257 |
T |
|
| Q |
130 |
a |
130 |
Q |
| |
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| |
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| T |
26099256 |
a |
26099256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 460 - 506
Target Start/End: Complemental strand, 26098334 - 26098288
Alignment:
| Q |
460 |
agggttgccttaataaacacacaactattaacatataaatagcctgt |
506 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26098334 |
agggttgccttaataaatacacaactattaacatataaatagcctgt |
26098288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 460 - 506
Target Start/End: Complemental strand, 25998809 - 25998763
Alignment:
| Q |
460 |
agggttgccttaataaacacacaactattaacatataaatagcctgt |
506 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
25998809 |
agggttgccttaataaatacacaagtattaacatataaatagcctgt |
25998763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 383 - 444
Target Start/End: Complemental strand, 25999245 - 25999184
Alignment:
| Q |
383 |
aagtttcccaatccttgcttcttctttttccaccaataaggcaaaaaagaccaacatgcgaa |
444 |
Q |
| |
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|||||| |||||||||||||||| || |||||||||||| || ||||||||||||||||| |
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|
| T |
25999245 |
aagttttccaatccttgcttctttcttctccaccaataagataagaaagaccaacatgcgaa |
25999184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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