View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7891_low_2 (Length: 503)
Name: NF7891_low_2
Description: NF7891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7891_low_2 |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 45633269 - 45632760
Alignment:
| Q |
1 |
atatctttctggatttacaaaagttgaagacaataatcattcaattaaaatatactttgaattgagaaaacaaagatacttcgaagctttagacaggtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45633269 |
atatctttctggatttacaaaagttgaagacaataatcattcaattaaaatatactttgaattgagaaaacaaagatacttcgaggctttagacaggtaa |
45633170 |
T |
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| Q |
101 |
ttaagcattttatggccaatatataacgaataatttatagaaatttgatgtgaaataagccg---aatatgcatgcatatacacttttttgtctaaaaca |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |
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| T |
45633169 |
ttaagcattttatggccaatatataacgaataatttatagaaatttgatgtgaagtaagccgttgaatatgcatgtatatacacttttttatctaaaaca |
45633070 |
T |
|
| Q |
198 |
ttaatttatgttagagtaggttgttgaaggtcaaccacgttgatcatgttcatagtagtccttgtatgatttatatttcaaggactaaaattatatggtc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45633069 |
ttaatttatgttagagtaggttgttgaaggtcaaccacgttgatcatgttaatagtagtccttgtatgatttatatttcaaggactaaaattatatggtc |
45632970 |
T |
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| Q |
298 |
tacatatttatagactaatataaacaaaagtaatgaagataagcaaggtagtggctctgaaaatattcttaaaagatccaagctgtttact----ctcac |
393 |
Q |
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|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | || |
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| T |
45632969 |
taaatatttatagactaatataaacaaaagtaaagaagataagcaaggtagtggctctaaaaatattcttaaaagatccaagctgtttccttccacgtac |
45632870 |
T |
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| Q |
394 |
tttcgccatgtagtctgcacattgtcttctctataaatatggactaatgaaacaactctgtctctagacataagctctttgatactatatgtagtctcaa |
493 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45632869 |
ttttgccatgtagtctgcacattgtcttctctataaatatggactaatgaaacaactctgtttctagacataagctctttgatactatatgtagtctcaa |
45632770 |
T |
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| Q |
494 |
catatttatt |
503 |
Q |
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|||||||||| |
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| T |
45632769 |
catatttatt |
45632760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 45632381 - 45632333
Alignment:
| Q |
268 |
ttatatttcaaggactaaaattatatggtctacatatttatagactaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45632381 |
ttatatttcaaggactaaaattatatggtctacatatttatagaataat |
45632333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 2657984 - 2658493
Alignment:
| Q |
1 |
atatctttctggatttacaaaagttgaagacaataatcattcaattaaaatatactttgaattgagaaaacaaagatacttcgaagctttagacaggtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2657984 |
atatctttctggatttacaaaagttgaagacaataatcattcaattaaaatatactttgaattgagaaaacaaagatacttcgaggctttagacaggtaa |
2658083 |
T |
|
| Q |
101 |
ttaagcattttatggccaatatataacgaataatttatagaaatttgatgtgaaataagccg---aatatgcatgcatatacacttttttgtctaaaaca |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |
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| T |
2658084 |
ttaagcattttatggccaatatataacgaataatttatagaaatttgatgtgaagtaagccgttgaatatgcatgtatatacacttttttatctaaaaca |
2658183 |
T |
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| Q |
198 |
ttaatttatgttagagtaggttgttgaaggtcaaccacgttgatcatgttcatagtagtccttgtatgatttatatttcaaggactaaaattatatggtc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2658184 |
ttaatttatgttagagtaggttgttgaaggtcaaccacgttgatcatgttaatagtagtccttgtatgatttatatttcaaggactaaaattatatggtc |
2658283 |
T |
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| Q |
298 |
tacatatttatagactaatataaacaaaagtaatgaagataagcaaggtagtggctctgaaaatattcttaaaagatccaagctgtttact----ctcac |
393 |
Q |
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|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | || |
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| T |
2658284 |
taaatatttatagactaatataaacaaaagtaaagaagataagcaaggtagtggctctaaaaatattcttaaaagatccaagctgtttccttccacgtac |
2658383 |
T |
|
| Q |
394 |
tttcgccatgtagtctgcacattgtcttctctataaatatggactaatgaaacaactctgtctctagacataagctctttgatactatatgtagtctcaa |
493 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2658384 |
ttttgccatgtagtctgcacattgtcttctctataaatatggactaatgaaacaactctgtttctagacataagctctttgatactatatgtagtctcaa |
2658483 |
T |
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| Q |
494 |
catatttatt |
503 |
Q |
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|||||||||| |
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| T |
2658484 |
catatttatt |
2658493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 2658872 - 2658920
Alignment:
| Q |
268 |
ttatatttcaaggactaaaattatatggtctacatatttatagactaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2658872 |
ttatatttcaaggactaaaattatatggtctacatatttatagaataat |
2658920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 20444626 - 20444553
Alignment:
| Q |
1 |
atatctttctggatttacaaaagttgaagacaataatcattcaattaaaatatactttgaattgagaaaacaaa |
74 |
Q |
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|||||| || ||||| ||||||||||||||||| |||| ||||| |||||||| ||||| | |||||||||| |
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| T |
20444626 |
atatctatcaggattcacaaaagttgaagacaacgatcactcaatcaaaatatattttgagcttagaaaacaaa |
20444553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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