View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7891_low_4 (Length: 425)
Name: NF7891_low_4
Description: NF7891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7891_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 9e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 175 - 372
Target Start/End: Complemental strand, 48185265 - 48185069
Alignment:
| Q |
175 |
gtcttctgacaatactcaaagtgccccctatgtcagaggaaattcaattgctaataatctaatgaactcccaatcatttaagcgcaggcttaagtcttta |
274 |
Q |
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| T |
48185265 |
gtcttctgacaatactcaaagtgccccctatgtcagaggaaattcaattgctaataatctaatgaactcccaatcatttaagcgcaggcttaagtcttta |
48185166 |
T |
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| Q |
275 |
attaaaagaacttgaagcaaaaggagctattgtcactaaagaagagtnnnnnnnnnnnnncactgtagtatagattattatttgcattattaaacaat |
372 |
Q |
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| T |
48185165 |
attaaaagatcttgaagcaaaaggagctattgtcactatagaagagt-aaaaaaaaaaaacactgtagtatagattattatttgcattattaaacaat |
48185069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 48185441 - 48185291
Alignment:
| Q |
1 |
tttgttcttgcaa-ggaagagcttaattgagtataaaattggaaatttgtgagagtggttgatggaatggaagatagataggtagcaccttatataatat |
99 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48185441 |
tttgttcttgcaaaggaagagcttaattgagtataaaattggaaatttgtgagagtggttgatggaatggaagatagataggtagcagcttatataatat |
48185342 |
T |
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| Q |
100 |
atagaatagagtggtgtgggggtccacattacatatattaatactagtgac |
150 |
Q |
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| T |
48185341 |
atagaatagagtggtgtgggggtccacattacatatattaatactagtgac |
48185291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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