View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7891_low_5 (Length: 292)

Name: NF7891_low_5
Description: NF7891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7891_low_5
NF7891_low_5
[»] chr7 (14 HSPs)
chr7 (56-292)||(4704274-4704513)
chr7 (24-279)||(4714400-4714664)
chr7 (195-292)||(4834012-4834108)
chr7 (189-292)||(4788706-4788812)
chr7 (195-290)||(4700955-4701050)
chr7 (64-149)||(4788504-4788590)
chr7 (26-86)||(4833791-4833852)
chr7 (22-146)||(4700733-4700859)
chr7 (56-149)||(4705612-4705707)
chr7 (135-204)||(4788604-4788674)
chr7 (210-292)||(4715333-4715417)
chr7 (122-198)||(4833848-4833922)
chr7 (135-199)||(4705723-4705786)
chr7 (253-292)||(4705886-4705925)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 56 - 292
Target Start/End: Original strand, 4704274 - 4704513
Alignment:
Q  56 tattaaagataaaatttatgagcaataattattacccagaacacatgatttgga--ttttcttagaaaaattaaacatgctaatatcttagttgtcatgc 153  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||||||  ||||||| ||||||||||||||||||||||||| |||||| |||    
T  4704274 tattaaagataaaatttatgagcaataattattttccagaacacgtgatttggaatttttcttggaaaaattaaacatgctaatatcttcgttgtcctgc 4704373  T
Q  154 ccagtatgtggtcacaaattaaa-ataaaatggtccaaatacttttctatttaaaataagacgttttggtgctttctccatgactgttttaaatatctta 252  Q
    || ||||||||| |||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||     
T  4704374 cctgtatgtggttacaaattaaacaaaaaatgggccaaatacttttctatttaaaataagacgttttggtgctttctccgtgactgtttaaaatatcttt 4704473  T
Q  253 gataccaaaatattccaaagacttcaccaagtcttcgtct 292  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4704474 gataccaaaatattccaaagacttcaccaagtcttcgtct 4704513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 279
Target Start/End: Original strand, 4714400 - 4714664
Alignment:
Q  24 aagaaaaagcttataattcagcaattttagc-ctattaaagataaaatttatgagcaataattatta------cccagaacacatgatttgga--ttttc 114  Q
    |||||||||||||||||||||||||| |||  ||||||||||||||||||||||| ||||||||| |      |||| ||||| |||||||||  |||||    
T  4714400 aagaaaaagcttataattcagcaattgtaggtctattaaagataaaatttatgagtaataattataattatttccca-aacacgtgatttggaatttttc 4714498  T
Q  115 ttagaaaaattaaacatgctaatatcttagttgtcatgcccagtatgtggtcacaaattaaaataaaatggtccaaatacttttctatttaaaataagac 214  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||| ||||||||||||||||||||||  ||||    
T  4714499 ttagaaaaattaaacatgctaatatcttagttgtcatgccctgtatgtggtcacaatttaaca-aaaatgggccaaatacttttctatttaaaaagagac 4714597  T
Q  215 gttttggtgctttctccatgactgttttaaatat--cttagataccaaaatattccaaagacttcac 279  Q
    ||||||| ||||||||| ||||| || || || |  ||||||| |||||||||||| ||||||||||    
T  4714598 gttttggagctttctccgtgacttttatatatcttacttagatgccaaaatattcccaagacttcac 4714664  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 4834012 - 4834108
Alignment:
Q  195 ttttctatttaaaataagacgttttggtgctttctccatgactgttttaaatatcttagataccaaaatattccaaagacttcaccaagtcttcgtct 292  Q
    |||||| ||||||||||||||||| || |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  4834012 ttttctttttaaaataagacgttt-ggagctttctccatgactgttataaatatcttagatgccaaaatattctaaagacttcaccaagtcttcgtct 4834108  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 189 - 292
Target Start/End: Original strand, 4788706 - 4788812
Alignment:
Q  189 aaatacttttctatttaaaataagacgttttggtgctttctccatgactgttttaaata---tcttagataccaaaatattccaaagacttcaccaagtc 285  Q
    ||||||||||||||| |||| |||||||||||| ||||||| | |||||| ||||||||   |||| |||||||||| ||||||||||||||||||||||    
T  4788706 aaatacttttctattgaaaagaagacgttttggagctttcttcctgactgctttaaatactatcttggataccaaaacattccaaagacttcaccaagtc 4788805  T
Q  286 ttcgtct 292  Q
    |||||||    
T  4788806 ttcgtct 4788812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 195 - 290
Target Start/End: Original strand, 4700955 - 4701050
Alignment:
Q  195 ttttctatttaaaataagacgttttggtgctttctccatgactgttttaaatatcttagataccaaaatattccaaagacttcaccaagtcttcgt 290  Q
    |||| ||||| ||| |||||||||||| ||||||||  ||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  4700955 ttttttatttcaaagaagacgttttggagctttctctgtgactattttaaatatcttagatggcaaaatattccaaagacttcaccaagtcttcgt 4701050  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 4788504 - 4788590
Alignment:
Q  64 ataaaatttatgagcaataattattacccagaacacatgatttggatttt-cttagaaaaattaaacatgctaatatcttagttgtc 149  Q
    ||||| || ||||||||||||||||  ||  ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  4788504 ataaatttcatgagcaataattattttcccaaacacgtgatttggatttttcctagaaaaattaaacatgctaatatcttagttgtc 4788590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 4833791 - 4833852
Alignment:
Q  26 gaaaaagcttataattcagcaatttta-gcctattaaagataaaatttatgagcaataatta 86  Q
    ||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  4833791 gaaaaagcttataattcagcaattttaggtctattatagataaaatttatgagcaataatta 4833852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 4700733 - 4700859
Alignment:
Q  22 agaagaaaaagcttataattcagcaattttagc-ctattaaagataaaatttatgagcaataattattacccagaacacatgatttgga--ttttcttag 118  Q
    |||| ||||| ||| ||||| |||||||||||  |||||| |||||||||||||||||||||||||||  ||  ||||   ||||||||  |||||||||    
T  4700733 agaaaaaaaaacttctaatttagcaattttaggtctattatagataaaatttatgagcaataattattttcccaaacattggatttggaatttttcttag 4700832  T
Q  119 aaaaattaaacatgctaatatcttagtt 146  Q
    ||||| |||||||| |||||||||||||    
T  4700833 aaaaa-taaacatgttaatatcttagtt 4700859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 4705612 - 4705707
Alignment:
Q  56 tattaaagataaaatttatgagcaataattattacccagaacacatgatttgga--ttttcttagaaaaattaaacatgctaatatcttagttgtc 149  Q
    ||||| ||||||| ||||||||||||||| |||  ||  ||||| | |||||||  ||||| ||||||||||||||||||||||||||||||||||    
T  4705612 tattatagataaagtttatgagcaataatcattttcccaaacacgtaatttggaatttttcctagaaaaattaaacatgctaatatcttagttgtc 4705707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 4788604 - 4788674
Alignment:
Q  135 aatatcttagttgtcatgcccagtatgtggtcacaaattaaaataaaa-tggtccaaatacttttctattt 204  Q
    ||||||||||||||| | ||||||||||||||||||| ||||| |||| |||||| |||||||||||||||    
T  4788604 aatatcttagttgtctttcccagtatgtggtcacaaaataaaaaaaaattggtccgaatacttttctattt 4788674  T

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Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 4715333 - 4715417
Alignment:
Q  210 aagacgttttggtgctttctccatgactgt--tttaaatatcttagataccaaaatattccaaagacttcaccaagtcttcgtct 292  Q
    |||||||||||| ||||||| | ||||| |  ||||| |||||||||| ||||||| |||| |||||||||||||||||||||||    
T  4715333 aagacgttttggagctttctgcgtgactatgctttaattatcttagatgccaaaatgttcctaagacttcaccaagtcttcgtct 4715417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 4833848 - 4833922
Alignment:
Q  122 aattaaacatgctaatatcttagttgtcatgcccagtatgtggtcacaaattaaaataaaatggtccaaatactttt 198  Q
    |||||||||||||||||||| ||||||| ||||| | |||||||||||||||  || ||||||||| ||||||||||    
T  4833848 aattaaacatgctaatatctaagttgtcctgccctgaatgtggtcacaaatt--aacaaaatggtcaaaatactttt 4833922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 4705723 - 4705786
Alignment:
Q  135 aatatcttagttgtcatgcccagtatgtggtcacaaattaaaataaaatggtccaaatacttttc 199  Q
    ||||||||||||||| ||||  ||||||||||||||||||| | ||| |||||||||||||||||    
T  4705723 aatatcttagttgtcttgccttgtatgtggtcacaaattaaca-aaattggtccaaatacttttc 4705786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 4705886 - 4705925
Alignment:
Q  253 gataccaaaatattccaaagacttcaccaagtcttcgtct 292  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  4705886 gataccaaaacattccaaagacttcaccaagtcttcgtct 4705925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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