View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7891_low_6 (Length: 255)
Name: NF7891_low_6
Description: NF7891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7891_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 45632677 - 45632490
Alignment:
| Q |
53 |
caagctaacattaatccaaatattatgcc-tatcagttcaaattctaaactgtcagcaaaattaatgtgtccactaaatcctacgatccatgagccagtg |
151 |
Q |
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| T |
45632677 |
caagctaacattaatccaaatattatgccctattagttcaaattctaaactgtcagcaaaattaatgtgtccactaaatcctacgatccatgagccggtg |
45632578 |
T |
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| Q |
152 |
tgatctcaagttaaacttccataatccgcacgactaggatttctgtaagagctctcgtcaacgtttaaagccacttgattctcgttag |
239 |
Q |
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| T |
45632577 |
tgatctcaagttaaacttccataatccgcacgatcaggatttccgtaagagctctcgtcaacgtttaaagccacttgattctcgttag |
45632490 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 45632756 - 45632708
Alignment:
| Q |
3 |
ctgagatgtagagtcttgaatcaaagatatagcctccatacaatcactt |
51 |
Q |
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| T |
45632756 |
ctgagatgttgagtcttgaatcaaagatatagcctccatacaatcactt |
45632708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 53 - 239
Target Start/End: Original strand, 2658576 - 2658763
Alignment:
| Q |
53 |
caagctaacattaatccaaatattatgcc-tatcagttcaaattctaaactgtcagcaaaattaatgtgtccactaaatcctacgatccatgagccagtg |
151 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2658576 |
caagctaacattaatccaaatattatgccctattagttcaaattctaaactgtcagcaaaattaatgtgtccactaaatcctacgatccatgagccggtg |
2658675 |
T |
|
| Q |
152 |
tgatctcaagttaaacttccataatccgcacgactaggatttctgtaagagctctcgtcaacgtttaaagccacttgattctcgttag |
239 |
Q |
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| T |
2658676 |
tgatctcaagttaaacttccataatccgcacgatcaggatttccgtaagagctctcgtcaacgtttaaagccacttgattctcgttag |
2658763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 2658497 - 2658545
Alignment:
| Q |
3 |
ctgagatgtagagtcttgaatcaaagatatagcctccatacaatcactt |
51 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2658497 |
ctgagatgttgagtcttgaatcaaagatatagcctccatacaatcactt |
2658545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 34888772 - 34888634
Alignment:
| Q |
101 |
ctgtcagcaaaattaatgtgtccactaaatcctacgatccatgagccagtgtgatctcaagttaaacttccataatccgcacgactaggatttctgtaag |
200 |
Q |
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||||||||| ||| ||||| |||||||| ||| || ||||||||||| |||||||||| | |||||| |||| || || | || || ||| | | |
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| T |
34888772 |
ctgtcagcacaatcaatgtatccactaactccaacaatccatgagccggtgtgatctcgaattaaacctccaaaacatgccctaccagagcttccgagat |
34888673 |
T |
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| Q |
201 |
agctctcgtcaacgtttaaagccacttgattctcgttag |
239 |
Q |
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| T |
34888672 |
aactctcatcaacgtttaaagccacttgattctcgttag |
34888634 |
T |
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