View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7892_low_1 (Length: 430)
Name: NF7892_low_1
Description: NF7892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7892_low_1 |
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| [»] scaffold0491 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 1110368 - 1109941
Alignment:
| Q |
1 |
taaaggtttcaacgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctataggcctataacactgtagtgtaatttgaa |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1110368 |
taaaggtttcaatgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctataggcctatagcactgtagtgtaatttgaa |
1110269 |
T |
|
| Q |
101 |
caaacctatattttcttgaatttgttgttgacaagagtaaa--atattggacatttgggcttgttagtttcatgcccctttatgcagtagcaatacactc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1110268 |
caaacctatattttcttgaatttgttgttgacaagagtggtttatattggacatttggacttgttagtttcatgcccctttatgcagtagcaatacactc |
1110169 |
T |
|
| Q |
199 |
atctttcaacatttgatgtgtttactgccaaacattctatgcagaattttaaatggaacgctggagtagagttttgagagtcgcgttgctttctaacagc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1110168 |
atctttcaacatttgatgtgtttactgccaaacattctatgcagaattttaaatggaacgctggagtagagttttgagagtcccgttgctttctaacagc |
1110069 |
T |
|
| Q |
299 |
gagacattccttagagttggtgcatctctttgcctttcttctgaaacaagaactttgagtgtaagttagtacaagtttatg-nnnnnnntccaaaagctt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
1110068 |
gagacattccttagagttggtgcatctctttgcctttcttctgaaataggaactttgagtgtaagttagtaccagtttatgaaaaaaaatccaaaagctt |
1109969 |
T |
|
| Q |
398 |
atagtctatatagaattttcatctcact |
425 |
Q |
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|||||||||||||||||||||| ||||| |
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| T |
1109968 |
atagtctatatagaattttcatttcact |
1109941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 1539302 - 1539481
Alignment:
| Q |
1 |
taaaggtttcaacgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctataggcctataacactgtagtgtaatttgaa |
100 |
Q |
| |
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||||||||| || ||||| |||||||||||| |||||||||||||| |||||||| | |||||||||||||| |||| ||||||| || ||| |
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| T |
1539302 |
taaaggtttaaataaattggtattattctgcaatacactttttgtaccaactgttgccaaattgtggctatag--------cactttagtgtagttagaa |
1539393 |
T |
|
| Q |
101 |
caaacctatattttcttgaatttgttgttgacaagagt--aaaatattggacatttgggcttgttagtttcatgcccctttatgcagt |
186 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
1539394 |
caaaattatattttcttgaatttgttgttgacaagagtggtttatattggacatttggacttgttagtttcatgctcctttatgcagt |
1539481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 1539481 - 1539532
Alignment:
| Q |
224 |
tgccaaacattctatgcagaattttaaatggaacgctggagtagagttttga |
275 |
Q |
| |
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||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |
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| T |
1539481 |
tgccaaacattctatgcagcatttttaatggaacgctggagtggagttttga |
1539532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 265
Target Start/End: Original strand, 4577 - 4691
Alignment:
| Q |
151 |
atttgggcttgttagtttcatgcccctttatgcagtagcaatacactcatctttcaacatttgatgtgtttactgccaaacattctatgcagaattttaa |
250 |
Q |
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|||||| || ||||||||||||| |||||||||||||||||| |||||| |||| ||||||| ||||||||| | |||| |||||||||| ||||||| | |
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| T |
4577 |
atttggactcgttagtttcatgctcctttatgcagtagcaattcactcacctttgaacattttatgtgtttaataccaatcattctatgccgaattttta |
4676 |
T |
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| Q |
251 |
atggaacgctggagt |
265 |
Q |
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||||||||||||||| |
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| T |
4677 |
atggaacgctggagt |
4691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4492 - 4564
Alignment:
| Q |
1 |
taaaggtttcaacgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctatag |
73 |
Q |
| |
|
||||||||| || ||||| |||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
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| T |
4492 |
taaaggtttaaataaattggtattattctgcaatacactttttgtaccaactgttgtcaaattgtggctatag |
4564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 265
Target Start/End: Original strand, 18747736 - 18747850
Alignment:
| Q |
151 |
atttgggcttgttagtttcatgcccctttatgcagtagcaatacactcatctttcaacatttgatgtgtttactgccaaacattctatgcagaattttaa |
250 |
Q |
| |
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|||||| || ||||||||||||| |||||||||||||||||| |||||| |||| ||||||| ||||||||| | |||| |||||||||| ||||||| | |
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| T |
18747736 |
atttggactcgttagtttcatgctcctttatgcagtagcaattcactcacctttgaacattttatgtgtttaataccaatcattctatgccgaattttta |
18747835 |
T |
|
| Q |
251 |
atggaacgctggagt |
265 |
Q |
| |
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||||||||||||||| |
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| T |
18747836 |
atggaacgctggagt |
18747850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 18737890 - 18737992
Alignment:
| Q |
163 |
tagtttcatgcccctttatgcagtagcaatacactcatctttcaacatttgatgtgtttactgccaaacattctatgcagaattttaaatggaacgctgg |
262 |
Q |
| |
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||||||||||| |||||||||||||||||| |||||| | || ||||||| ||||||||| |||||| |||||||||| ||||||| ||||||||||||| |
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| T |
18737890 |
tagtttcatgctcctttatgcagtagcaattcactcaccattgaacattttatgtgtttaatgccaatcattctatgccgaatttttaatggaacgctgg |
18737989 |
T |
|
| Q |
263 |
agt |
265 |
Q |
| |
|
||| |
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| T |
18737990 |
agt |
18737992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 18742784 - 18742886
Alignment:
| Q |
163 |
tagtttcatgcccctttatgcagtagcaatacactcatctttcaacatttgatgtgtttactgccaaacattctatgcagaattttaaatggaacgctgg |
262 |
Q |
| |
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||||||||||| |||||||||||||||||| |||||| |||| ||||||| ||||||||| |||||| |||||||||| ||||||| |||||||| |||| |
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| T |
18742784 |
tagtttcatgctcctttatgcagtagcaattcactcacctttgaacattttatgtgtttaatgccaatcattctatgccgaatttttaatggaacactgg |
18742883 |
T |
|
| Q |
263 |
agt |
265 |
Q |
| |
|
||| |
|
|
| T |
18742884 |
agt |
18742886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 18737793 - 18737865
Alignment:
| Q |
1 |
taaaggtttcaacgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctatag |
73 |
Q |
| |
|
||||||||| || ||||| |||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
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| T |
18737793 |
taaaggtttaaaaaaattggtattattctgcaatacactttttgtaccaactgttgtcaaattgtggctatag |
18737865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 18742687 - 18742759
Alignment:
| Q |
1 |
taaaggtttcaacgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctatag |
73 |
Q |
| |
|
||||||||| || ||||| |||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
18742687 |
taaaggtttaaataaattggtattattctgcaatacactttttgtaccaactgttgtcaaattgtggctatag |
18742759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 18747651 - 18747723
Alignment:
| Q |
1 |
taaaggtttcaacgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctatag |
73 |
Q |
| |
|
||||||||| || ||||| |||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
18747651 |
taaaggtttaaataaattggtattattctgcaatacactttttgtaccaactgttgtcaaattgtggctatag |
18747723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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