View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7892_low_2 (Length: 395)
Name: NF7892_low_2
Description: NF7892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7892_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 367
Target Start/End: Original strand, 40411756 - 40412104
Alignment:
| Q |
17 |
aatatttgtaggcaaacacactttggttggtgagcaattgatccacaatagggccagaaacaaaaagaattgctgcttggaatggagcagaatggtagag |
116 |
Q |
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| T |
40411756 |
aatatttgtaggcaaacacactttggttggtgagcaattgatccacaatagggccagaaacaaaaagaattgctgcttggaatggagcagaatggtagag |
40411855 |
T |
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| Q |
117 |
caactgtgtggaagaaacattaagcgtcttttgtattgtgttggttagctaaattaagcactaagttaagaaatctaaatatatcaaattttcttcacct |
216 |
Q |
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| T |
40411856 |
caactgtgtggaagaaacattaagcttcttttgtattgtgttggttagctaaattaatcaccaagttaagaaatctaa--atatcaaattttcttcacct |
40411953 |
T |
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| Q |
217 |
ttaagccatcataactaattaacaacaataaatcacatagtagctatcataaaggatacaatttggctaacacatgttgttatgattgctagaagggaaa |
316 |
Q |
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| T |
40411954 |
ttaagccatcatatctaattaacaacaataaatcacatagtagctattataaaggatacaatttggctaacacatgttgttatgattgctagaagggaaa |
40412053 |
T |
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| Q |
317 |
taatggttcccacaaaattgagttgaagatcagtgatagaggcaacaccaa |
367 |
Q |
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| T |
40412054 |
taatggttcccacaaaattgagttgaagatcagtgatagaggcaacaccaa |
40412104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 21683822 - 21683651
Alignment:
| Q |
17 |
aatatttgtaggcaaacacactttggttggtgagcaattgatccacaatagggccagaaacaaaaagaattgctgcttggaatggagcagaatggtagag |
116 |
Q |
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| T |
21683822 |
aatatttgtatgcaaagacattttgcttggttagcatccgatcgacaagagggcctgaaacaaaaagaattgctgcttggaatggagcagactggtagag |
21683723 |
T |
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| Q |
117 |
caactgtgtggaagaaacattaagcgtcttttgtattgtgttggttagctaaattaagcactaagttaagaa |
188 |
Q |
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| T |
21683722 |
aagttgtgtggaagtgacattaagcttcttctgtattgtgttggtaagctgaattgttcaataagttaagaa |
21683651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 266 - 361
Target Start/End: Complemental strand, 21683429 - 21683334
Alignment:
| Q |
266 |
taaaggatacaatttggctaacacatgttgttatgattgctagaagggaaataatggttcccacaaaattgagttgaagatcagtgatagaggcaa |
361 |
Q |
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| T |
21683429 |
taaaggatacaatttggccaacacatgttgttatgatagctagaagtgaaagaatggttccaacaaaattgagctgaaggtctgtgatagaagcaa |
21683334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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