View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7892_low_3 (Length: 317)
Name: NF7892_low_3
Description: NF7892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7892_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 12255097 - 12254814
Alignment:
| Q |
13 |
taatatttttgtacatactaatgtatgatactattgtttgtccttggtagtttcatgacaacaaattcnnnnnnnctaaagtaaataaatgatttgtata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
12255097 |
taatatttttgtacatactaatgtatgatactattgtttgtccttggtagtttcatgacaacaaattctttttttctaaagtaaataaatgaattgtata |
12254998 |
T |
|
| Q |
113 |
caaatattaattaaacaattaattcatagttatctcttcctttctttacattttcttatcaaattccattacttaaactctcttccagcattttcatctc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12254997 |
caaatattaattaaacaattaattcatagttatttcttcctttctttacattttcgtatcaaattccattacttaaaccctcttccagcattttcatctc |
12254898 |
T |
|
| Q |
213 |
aaacaatcattcctaaaaatacaaaaccataccctaaaactacttatatgtttcataataatttagctaccaatagtggacaaa |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12254897 |
aaacaatcattcctaaaaatacaaaaccataccctaaaactacttatatgtttcataataatttagctaccaatagtggacaaa |
12254814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 12260640 - 12260357
Alignment:
| Q |
13 |
taatatttttgtacatactaatgtatgatactattgtttgtccttggtagtttcatgacaacaaattcnnnnnnnctaaagtaaataaatgatttgtata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
12260640 |
taatatttttgtacatactaatgtatgatactattgtttgtccttggtagtttcatgacaacaaattctttttttctaaagtaaataaatgaattgtata |
12260541 |
T |
|
| Q |
113 |
caaatattaattaaacaattaattcatagttatctcttcctttctttacattttcttatcaaattccattacttaaactctcttccagcattttcatctc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12260540 |
caaatattaattaaacaattaattcatagttatttcttcctttctttacattttcgtatcaaattccattacttaaaccctcttccagcattttcatctc |
12260441 |
T |
|
| Q |
213 |
aaacaatcattcctaaaaatacaaaaccataccctaaaactacttatatgtttcataataatttagctaccaatagtggacaaa |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12260440 |
aaacaatcattcctaaaaatacaaaaccataccctaaaactacttatatgtttcataataatttagctaccaatagtggacaaa |
12260357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 12262795 - 12262738
Alignment:
| Q |
1 |
acctatatatactaatatttttgtacatactaatgtatgatactattgtttgtccttg |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12262795 |
acctatatatactaatatttttgtacatactaatgtatgatactattgtttgtccttg |
12262738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 12285270 - 12285203
Alignment:
| Q |
162 |
attttcttatcaaattccattacttaaactctcttccagcattttcatctcaaacaatcattcctaaa |
229 |
Q |
| |
|
||||||| ||||||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
12285270 |
attttctcatcaaatcccattacttataccctcttccaacattttcatctcaaataatcattcctaaa |
12285203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 12258502 - 12258430
Alignment:
| Q |
170 |
atcaaattccattacttaaactctcttccagcattttcatctcaaacaatcattcctaaaaatacaaaaccat |
242 |
Q |
| |
|
||||||| ||||| || |||| |||||||| | ||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
12258502 |
atcaaatcccattgctcaaaccctcttccaacgttttcatctcaaacaatcatttctaaaaatataaaaccat |
12258430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 12265894 - 12265822
Alignment:
| Q |
170 |
atcaaattccattacttaaactctcttccagcattttcatctcaaacaatcattcctaaaaatacaaaaccat |
242 |
Q |
| |
|
||||||| ||||| || |||| |||||||| | ||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
12265894 |
atcaaatcccattgctcaaaccctcttccaacgttttcatctcaaacaatcatttctaaaaatataaaaccat |
12265822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 12265940 - 12266012
Alignment:
| Q |
170 |
atcaaattccattacttaaactctcttccagcattttcatctcaaacaatcattcctaaaaatacaaaaccat |
242 |
Q |
| |
|
||||||| ||||| || |||| |||||||| | ||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
12265940 |
atcaaatcccattgctcaaaccctcttccaacgttttcatctcaaacaatcatttctaaaaatataaaaccat |
12266012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University