View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7892_low_4 (Length: 316)
Name: NF7892_low_4
Description: NF7892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7892_low_4 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
| [»] scaffold0184 (2 HSPs) |
| | |
|
| [»] scaffold0078 (4 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 299
Target Start/End: Original strand, 8294608 - 8294891
Alignment:
| Q |
16 |
ataggcagaactagaatttttacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8294608 |
ataggcagaactagaatttttacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttga |
8294707 |
T |
|
| Q |
116 |
gagagtgttccaccacttccaaaagagacaaaaagaacagaacttggtggttgattttccaaccaccttaaacatattgacatgcttgcttcattatttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
8294708 |
gagagtgttccaccacttccaaaagagacaaaaagaacagaacttggttgttgattttccaaccaccttaaacacattgacatgtttgcttcattatttg |
8294807 |
T |
|
| Q |
216 |
actcattcctaatcataggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggttccaaat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8294808 |
actcattcctaatcataggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggttccaaat |
8294891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 33257143 - 33256863
Alignment:
| Q |
20 |
gcagaactagaatttttacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagaga |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33257143 |
gcagaactagaatgtttacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagaga |
33257044 |
T |
|
| Q |
120 |
gtgttccaccacttccaaaagagacaaaaagaacagaacttggtggttgattttccaaccaccttaaacatattgacatgcttgcttcattatttgactc |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
33257043 |
gtgttccaccacttccaaaggagacaaaaataacagaacttggtggctgattttccaaccaccttaaacacactgacatgtttgcttcattatttgactc |
33256944 |
T |
|
| Q |
220 |
attcctaatcataggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggttccaaatt |
300 |
Q |
| |
|
||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||| | ||||| |||||||||| |
|
|
| T |
33256943 |
atttctaatgataggtccaaccggaaaaacactaggtttctctctgtcttgaagtacccttacggcttccagttccaaatt |
33256863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 1261 - 981
Alignment:
| Q |
20 |
gcagaactagaatttttacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagaga |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1261 |
gcagaactagaatgtttacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagaga |
1162 |
T |
|
| Q |
120 |
gtgttccaccacttccaaaagagacaaaaagaacagaacttggtggttgattttccaaccaccttaaacatattgacatgcttgcttcattatttgactc |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
1161 |
gtgttccaccacttccaaaggagacaaaaataacagaacttggtggctgattttccaaccaccttaaacacactgacatgtttgcttcattatttgactc |
1062 |
T |
|
| Q |
220 |
attcctaatcataggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggttccaaatt |
300 |
Q |
| |
|
||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||| | ||||| |||||||||| |
|
|
| T |
1061 |
atttctaatgataggtccaaccggaaaaacactaggtttctctctgtcttgaagtacccttacggcttccagttccaaatt |
981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 34 - 299
Target Start/End: Original strand, 894674 - 894942
Alignment:
| Q |
34 |
tttacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccactt |
133 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| | ||||||||||||||| ||||| |||||||| |||||||| || ||||| | |||||||||||| |
|
|
| T |
894674 |
tttacttggaactctaacaacccacaagaatttcttaccactcaattctagtccaaatgctaactcattgagttgttcatgagaaactgttccaccactc |
894773 |
T |
|
| Q |
134 |
ccaaaagagacaaaaagaacagaacttggtggttgattttccaaccaccttaaacatattga---catgcttgcttcattatttgactcattcctaatca |
230 |
Q |
| |
|
|||||| | ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| | ||||| ||| |||||||| || | |
|
|
| T |
894774 |
ccaaaacatacataaagaacagaacttggtggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctgtgga |
894873 |
T |
|
| Q |
231 |
taggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggttccaaat |
299 |
Q |
| |
|
||||| || ||||||| || |||||||||| | |||||||||| ||||||||| || |||||||||| |
|
|
| T |
894874 |
ggggtcccactggataaaaacaaggtttctctttttcttgaagaagccttatgacctcaggttccaaat |
894942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 34 - 299
Target Start/End: Complemental strand, 905969 - 905701
Alignment:
| Q |
34 |
tttacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccactt |
133 |
Q |
| |
|
|||||||||| |||| |||||||||||||| || | |||||||||||||| ||||| |||||||| || ||||| || ||||| | |||||||||||| |
|
|
| T |
905969 |
tttacttggaactctaacaacccacaagaactttttaccactcaattctaatccaaatgctaactcattcagttgttcatgagaaactgttccaccactc |
905870 |
T |
|
| Q |
134 |
ccaaaagagacaaaaagaacagaacttggtggttgattttccaaccaccttaaacatattga---catgcttgcttcattatttgactcattcctaatca |
230 |
Q |
| |
|
|||||| | ||| ||||||||||| |||| |||||||| ||||||||||||||||| ||||| ||| | ||||| ||| |||||||| ||||| | |
|
|
| T |
905869 |
ccaaaacatacataaagaacagaatttggaggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataa |
905770 |
T |
|
| Q |
231 |
taggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggttccaaat |
299 |
Q |
| |
|
| ||||| || |||||||||| |||||||||| | ||||||||||||||||| || || || ||||||| |
|
|
| T |
905769 |
tgggtcccactggataaacacaaggtttctctttttcttgaagaacccttataacatctggctccaaat |
905701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 1963387 - 1963282
Alignment:
| Q |
36 |
tacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttcc |
135 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||| ||||||||| | ||| ||||| ||||| | | ||| ||||| || ||||| |||||||| || |
|
|
| T |
1963387 |
tacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactacc |
1963288 |
T |
|
| Q |
136 |
aaaaga |
141 |
Q |
| |
|
|||||| |
|
|
| T |
1963287 |
aaaaga |
1963282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 196
Target Start/End: Complemental strand, 3707790 - 3707639
Alignment:
| Q |
45 |
ctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttccaaaagagac |
144 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| || || ||||||| || ||| ||| | |||||| | ||||| ||||||||||| | || |
|
|
| T |
3707790 |
ctctcaaaacccacaagaatttctgaccactcaattccagccccaaagctagttcattggtttgttgttgagataaagttcctccacttccaaagcacac |
3707691 |
T |
|
| Q |
145 |
aaaaagaacagaacttggtggttgattttccaaccaccttaaacatattgac |
196 |
Q |
| |
|
| | | ||| || |||||| |||||| ||||||||| | ||||| |||||| |
|
|
| T |
3707690 |
atacaaaactgagtttggtgtttgattctccaaccacttcaaacagattgac |
3707639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 3770405 - 3770556
Alignment:
| Q |
45 |
ctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttccaaaagagac |
144 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| || || || ||||||| || ||| ||| | |||||| | ||||| ||||||||||| |||| |
|
|
| T |
3770405 |
ctctcaaaacccacaagaatttctgaccactcaactccagccccaaagctagttcattggtttgttgttgagaaaaagttcctccacttccaaagcagac |
3770504 |
T |
|
| Q |
145 |
aaaaagaacagaacttggtggttgattttccaaccaccttaaacatattgac |
196 |
Q |
| |
|
| | | ||| || |||||| |||||| ||||||||| | ||||| |||||| |
|
|
| T |
3770505 |
atacaaaactgagtttggtgtttgattctccaaccacttcaaacagattgac |
3770556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 46720409 - 46720498
Alignment:
| Q |
174 |
ccaaccaccttaaacatattgacatgcttgcttcattatttgactcattcctaatcataggtccaaccggataaacactaggtttctctct |
264 |
Q |
| |
|
||||| ||||| |||| | |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| |
|
|
| T |
46720409 |
ccaacaaccttgaacacactgacatgcttgcttcattatttgactcattcctaatggcaggtccaa-cggataaacactagggttctctct |
46720498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 15380 - 15523
Alignment:
| Q |
37 |
acttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttcca |
136 |
Q |
| |
|
|||||| |||||||||||||| | |||| | |||||||||||||| | ||||||||||| || || | ||| |||||| |||||||||||||||||| |
|
|
| T |
15380 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttcca |
15479 |
T |
|
| Q |
137 |
aaagagacaaaaagaacagaacttggtggttgattttccaacca |
180 |
Q |
| |
|
||||| ||| | | ||||||| || ||||||| |||| |||||| |
|
|
| T |
15480 |
aaagaaacatacaaaacagaattttgtggttggtttttcaacca |
15523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 11863 - 11952
Alignment:
| Q |
68 |
tgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttccaaaagagacaaaaagaacagaa |
157 |
Q |
| |
|
|||||||| ||||| | |||||||||||||| || | ||| |||||||| |||||||||||||||||||| || ||||| | ||||||| |
|
|
| T |
11863 |
tgaccacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaacaaacaaaacagaa |
11952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 57464 - 57321
Alignment:
| Q |
37 |
acttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttcca |
136 |
Q |
| |
|
|||||| |||||||||||||| | |||| | |||||||||||||| | ||||||||||| || || | ||| |||||| |||||||||||||||||| |
|
|
| T |
57464 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttcca |
57365 |
T |
|
| Q |
137 |
aaagagacaaaaagaacagaacttggtggttgattttccaacca |
180 |
Q |
| |
|
||||| ||| | | ||||||| || ||||||| |||| |||||| |
|
|
| T |
57364 |
aaagaaacatacaaaacagaattttgtggttggtttttcaacca |
57321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 22175 - 22032
Alignment:
| Q |
37 |
acttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttcca |
136 |
Q |
| |
|
|||||| ||||||| ||||| | |||| | |||||||||||||| | ||||||||||| ||| |||| ||| |||||| |||||||||||||||||| |
|
|
| T |
22175 |
acttggtgctctcaatacccaaatgaatctttgaccactcaattccaaaccaaaagctagctcattgatttgtgtttgagaaagtgttccaccacttcca |
22076 |
T |
|
| Q |
137 |
aaagagacaaaaagaacagaacttggtggttgattttccaacca |
180 |
Q |
| |
|
||||| ||| | | ||| ||| || ||||||| |||| |||||| |
|
|
| T |
22075 |
aaagaaacatacaaaactgaattttgtggttggtttttcaacca |
22032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 2921 - 2778
Alignment:
| Q |
37 |
acttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttcca |
136 |
Q |
| |
|
|||||| |||||||||||||| | |||| | |||||||||||||| | ||||||||||| || || | || ||| || |||||||||||||||||| |
|
|
| T |
2921 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattcatctgtctttgtgaaagtgttccaccacttcca |
2822 |
T |
|
| Q |
137 |
aaagagacaaaaagaacagaacttggtggttgattttccaacca |
180 |
Q |
| |
|
||||| ||| | | ||||||| || ||||||| |||| |||||| |
|
|
| T |
2821 |
aaagaaacatacaaaacagaattttgtggttggtttttcaacca |
2778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 60981 - 60892
Alignment:
| Q |
68 |
tgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttccaaaagagacaaaaagaacagaa |
157 |
Q |
| |
|
|||||||| ||||| | |||||||||||||| || | ||| |||||||| |||||||||||||||||||| || ||||| | ||||||| |
|
|
| T |
60981 |
tgaccacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaacaaacaaaacagaa |
60892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 16490744 - 16490658
Alignment:
| Q |
70 |
accactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttccaaaagagacaaaaagaacaga |
156 |
Q |
| |
|
|||||||||||||| ||| |||||||||| || | ||| ||||| || ||||||||||||||||||||||| ||||| | |||||| |
|
|
| T |
16490744 |
accactcaattctaacccataagctaactcattcacttgctcttgtgaaagtgttccaccacttccaaaagacacaaacaaaacaga |
16490658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 16566502 - 16566434
Alignment:
| Q |
112 |
ttgagagagtgttccaccacttccaaaagagacaaaaagaacagaacttggtggttgattttccaacca |
180 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||| | | ||||||| || ||||||| |||| |||||| |
|
|
| T |
16566502 |
ttgagaaagtgttccaacacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaacca |
16566434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 16599160 - 16599228
Alignment:
| Q |
112 |
ttgagagagtgttccaccacttccaaaagagacaaaaagaacagaacttggtggttgattttccaacca |
180 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||| | | ||||||| || ||||||| |||| |||||| |
|
|
| T |
16599160 |
ttgagaaagtgttccaacacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaacca |
16599228 |
T |
|
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 5902560 - 5902455
Alignment:
| Q |
36 |
tacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttcc |
135 |
Q |
| |
|
||||||| ||||| |||||||| |||||||| ||| ||||||||| | ||||| ||| ||||| | | ||| ||||| || |||| ||||||||||| |
|
|
| T |
5902560 |
tacttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagccaactcatcaatttgttcttgtgaaagtgcaccaccacttcc |
5902461 |
T |
|
| Q |
136 |
aaaaga |
141 |
Q |
| |
|
|||||| |
|
|
| T |
5902460 |
aaaaga |
5902455 |
T |
|
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