View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7892_low_7 (Length: 202)
Name: NF7892_low_7
Description: NF7892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7892_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 5e-98; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 4715518 - 4715334
Alignment:
| Q |
1 |
ttgatatctttttgcctcagtgtatttatagttcgatttgatagatttgataattaaccaaaattaacggtgtaaacaataatatatggatgctcgagta |
100 |
Q |
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| T |
4715518 |
ttgatatctttttgcctcagtgtatttatagttcgatttgatagatttgataattaaccaaaatttacggtgtaaacaataatatatggatgctcgagta |
4715419 |
T |
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| Q |
101 |
aagacgaagacttggtgaagtcttaggaacattttggcatctaagataattaaagcatagtcacgcagaaagctccaaaacgtct |
185 |
Q |
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| T |
4715418 |
aagacgaagacttggtgaagtcttaggaacattttggcatctaagataattaaagcatagtcacgcagaaagctccaaaacgtct |
4715334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 4790093 - 4790026
Alignment:
| Q |
118 |
aagtcttaggaacattttggcatctaagataattaaagcatagtcacgcagaaagctccaaaacgtct |
185 |
Q |
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| T |
4790093 |
aagtctttggaacattttggcatctaagataattaaagcatagtcacgcagaaagctcgaaaacgtct |
4790026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 4818477 - 4818411
Alignment:
| Q |
119 |
agtcttaggaacattttggcatctaagataattaaagcatagtcacgcagaaagctccaaaacgtct |
185 |
Q |
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| T |
4818477 |
agtctttggaacattttggcatctaagataattagagcatagtcacgcagaaagctccaaaacgtct |
4818411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 54 - 185
Target Start/End: Complemental strand, 4701103 - 4700971
Alignment:
| Q |
54 |
ttaaccaaaattaacggtgtaaacaataatata---tggatgctcgagtaaagacgaagacttggtgaagtcttaggaacattttggcatctaagataat |
150 |
Q |
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| T |
4701103 |
ttaaccaaatatcacggtgtaaagaacaatataaagtggatgcccgagtgaatacgaagacttggtgaagtctttggaatattttgccatctaagatatt |
4701004 |
T |
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| Q |
151 |
taaagcatagtcacgcagaaagctccaaaacgtct |
185 |
Q |
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| T |
4701003 |
taaa--atagtcacagagaaagctccaaaacgtct |
4700971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 4704524 - 4704432
Alignment:
| Q |
91 |
tgctcgagtaaagacgaagacttggtgaagtcttaggaacattttggcatctaagataattaaagcatagtcacgcagaaagctccaaaacgtct |
185 |
Q |
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| T |
4704524 |
tgctcgagtgaagacgaagacttggtgaagtctttggaatattttggtatcaaagatattttaa--acagtcacggagaaagcaccaaaacgtct |
4704432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 4790146 - 4790098
Alignment:
| Q |
27 |
tatagttcgatttgatagatttgataattaaccaaaattaacggtgtaa |
75 |
Q |
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| T |
4790146 |
tatagttcgatttgatagattttataattaaccaaaatttacggtgtaa |
4790098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 4834120 - 4834062
Alignment:
| Q |
90 |
atgctcgagtaaagacgaagacttggtgaagtcttaggaacattttggcatctaagata |
148 |
Q |
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| T |
4834120 |
atgcccgagtgaagacgaagacttggtgaagtctttagaatattttggcatctaagata |
4834062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 4705940 - 4705898
Alignment:
| Q |
87 |
tggatgctcgagtaaagacgaagacttggtgaagtcttaggaa |
129 |
Q |
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| T |
4705940 |
tggatgctcgagtgaagacgaagacttggtgaagtctttggaa |
4705898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 4788823 - 4788728
Alignment:
| Q |
91 |
tgctcgagtaaagacgaagacttggtgaagtcttaggaacattttggcatctaagataat---taaagcatagtcacgcagaaagctccaaaacgtct |
185 |
Q |
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| T |
4788823 |
tgctcaagtgaagacgaagacttggtgaagtctttggaatgttttggtatccaagatagtatttaaagca--gtcaggaagaaagctccaaaacgtct |
4788728 |
T |
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