View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7893_high_1 (Length: 230)
Name: NF7893_high_1
Description: NF7893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7893_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 36616424 - 36616629
Alignment:
| Q |
13 |
agcagagaagttgacattgaaaatggatgttaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgttgct |
112 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36616424 |
agcagagaagttgacattgaaaatggatgtcaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgttgct |
36616523 |
T |
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| Q |
113 |
gagagagttgcagagaggttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgttttctcataataagacaaggct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36616524 |
gagagagttgcagagaggttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgttttctcataacaagacaaggct |
36616623 |
T |
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| Q |
213 |
atatat |
218 |
Q |
| |
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|||||| |
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| T |
36616624 |
atatat |
36616629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 36650178 - 36650383
Alignment:
| Q |
13 |
agcagagaagttgacattgaaaatggatgttaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgttgct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36650178 |
agcagagaagttgacattgaaaatggatgttaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgttgct |
36650277 |
T |
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| Q |
113 |
gagagagttgcagagaggttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgttttctcataataagacaaggct |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36650278 |
gagagagttgcagagaagttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgttttctcataacaagacaaggct |
36650377 |
T |
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| Q |
213 |
atatat |
218 |
Q |
| |
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|||||| |
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| T |
36650378 |
atatat |
36650383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 2187215 - 2187038
Alignment:
| Q |
13 |
agcagagaagttgacattgaaaatggatgttaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgttgct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2187215 |
agcagagaagttgacattgaaaatggatgttaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgttgct |
2187116 |
T |
|
| Q |
113 |
gagagagttgcagagaggttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgt |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2187115 |
gagagagttgcagagaggttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgt |
2187038 |
T |
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