View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7893_low_1 (Length: 353)
Name: NF7893_low_1
Description: NF7893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7893_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 335
Target Start/End: Original strand, 56469338 - 56469662
Alignment:
| Q |
11 |
cagagaatgtaaacagtggaccagaaacaacatcaccggcaactaaatgcctcatgtacggttctgcatgcacttccaaataaggcaaccccttcatttc |
110 |
Q |
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| T |
56469338 |
cagagaatgtaaacagtggaccagaaacaacatcaccggcaactaaatgcctcatgtacggttctgcatgcacttccaaataaggcaaccccttcatttc |
56469437 |
T |
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| Q |
111 |
cactatttgatcataaacacctttgttaaaacaatctgccacagactttgagatgaggagaactaacatgaccaatggtagcatgaggaggttgttagta |
210 |
Q |
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| T |
56469438 |
cactatttgatcataaacacctttgttaaaacaatctgccacagactttgagatgaggagaactaacatgaccaatggtagcatgaggaggttgttagta |
56469537 |
T |
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| Q |
211 |
agttcgagaagtatgacacacaaagagacagtcattctcattgtgccaccaaggaaggatgcagctcccaaaagtgcaaacaaacccacatccaaaactg |
310 |
Q |
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| T |
56469538 |
agttcgagaagaatgacacacaaagagacagtcattctcattgtgccaccaaggaaggatgcagcacccaaaagtgcaaacaaacccacatccaaaactg |
56469637 |
T |
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| Q |
311 |
taaatggacttaacagacttccagc |
335 |
Q |
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| T |
56469638 |
taaatggacttaacagacttccagc |
56469662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 297
Target Start/End: Complemental strand, 155206 - 154930
Alignment:
| Q |
21 |
aaacagtggaccagaaacaacatcaccggcaactaaatgcctcatgtacggttctgcatgcacttccaaataaggcaaccccttcatttccactatttga |
120 |
Q |
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| T |
155206 |
aaacagtggaccagaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgcttccatataaggtagtcccttcaacgccacaatctga |
155107 |
T |
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| Q |
121 |
tcataaacacctttgttaaaacaatctgccacagactttgagatgaggagaactaacatgaccaatggtagcatgaggaggttgttagtaagttcgagaa |
220 |
Q |
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|||||||||||||||||||||||||| ||||| | ||| || ||||||||||| |||||||||||||||||||| | | ||| ||||| ||||| |||| |
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| T |
155106 |
tcataaacacctttgttaaaacaatcagccactgtcttagaaatgaggagaaccaacatgaccaatggtagcatcaacaagttattagtgagttcaagaa |
155007 |
T |
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| Q |
221 |
gtatgacacacaaagagacagtcattctcattgtgccaccaaggaaggatgcagctcccaaaagtgcaaacaaaccc |
297 |
Q |
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| T |
155006 |
gtatgacacatagagaaactgtcattctcatcgtgccaccaaggaaagatgcggctccaaggagagcaaacaaaccc |
154930 |
T |
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