View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7893_low_2 (Length: 341)
Name: NF7893_low_2
Description: NF7893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7893_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 8117415 - 8117075
Alignment:
| Q |
1 |
tattggtcaaattagcttcaacttcccactttctggttggaaaaattcatactattcttgcactgcttgagttcttgctgcagttgaaattgtcaaagga |
100 |
Q |
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| T |
8117415 |
tattggtcaaattagcttcaacttcccactttctggttggaaaaattcatactattcttgcactgcttgagttcttgctgcagttgaaattgtcaaagga |
8117316 |
T |
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| Q |
101 |
attaggtagtttctctaaatattagtcacacaagaaaacaatagtgtgtcatttgaattataattatctactaactatgatagtttatgaatcacggaca |
200 |
Q |
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| T |
8117315 |
attaggtagtttctctaaatattagtcacacaagaaaacaatagtgtggcatttgaattataattatctacaaactatgatagtttatgaatcacagaca |
8117216 |
T |
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| Q |
201 |
cttcttagattagacatgtctcggtagcgaacatgtagttagtagtctatgaatcgcagacatttcttggattaggcatgtcccgatgtcggacacgaca |
300 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |
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| T |
8117215 |
cttctcagattagacatgtctcggtaacgaacatgtagttagtagtctatgaatcgcagacattcctcggattaggcgtgtcccgatgtcggacacgaca |
8117116 |
T |
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| Q |
301 |
tgtgtccaacaacgacacgacacgacaccgatacttgtaat |
341 |
Q |
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|||||||||||||||||||| |||||| ||||||||||| |
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| T |
8117115 |
catgtccaacaacgacacgacatgacaccaatacttgtaat |
8117075 |
T |
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