View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7893_low_3 (Length: 239)
Name: NF7893_low_3
Description: NF7893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7893_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 102 - 222
Target Start/End: Complemental strand, 30747966 - 30747846
Alignment:
| Q |
102 |
gtggggatttaattgaatggttaggattgccttcaacacacaagacaaataacgggattaatggaacaaacatacccaatcacgaagacgaagtctttta |
201 |
Q |
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| T |
30747966 |
gtggggatttaattgaatggttaggattgccttcaacacacaagacaaataacgggattaatggaacaaacatacccaatgacgaagacgaagtctttta |
30747867 |
T |
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| Q |
202 |
gagtggaggaagcgacaatgg |
222 |
Q |
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| T |
30747866 |
gagtggaggaagcgacaatgg |
30747846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 102 - 222
Target Start/End: Complemental strand, 30481671 - 30481551
Alignment:
| Q |
102 |
gtggggatttaattgaatggttaggattgccttcaacacacaagacaaataacgggattaatggaacaaacatacccaatcacgaagacgaagtctttta |
201 |
Q |
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| T |
30481671 |
gtggggatttaattgaatggttaggattggcgtcgacacacaagacaaataacgggattaatggaacaaacatacccaatgacgaagacgcagtcttttg |
30481572 |
T |
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| Q |
202 |
gagtggaggaagcgacaatgg |
222 |
Q |
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| T |
30481571 |
gagtggaggaagtgacaatgg |
30481551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30340217 - 30340260
Alignment:
| Q |
1 |
taaagttacaaatgttctaattcaggtcattttcttcatcatag |
44 |
Q |
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| T |
30340217 |
taaagttacaaatgttctaattcaggtcattttcttcatcatag |
30340260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30481769 - 30481726
Alignment:
| Q |
1 |
taaagttacaaatgttctaattcaggtcattttcttcatcatag |
44 |
Q |
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| T |
30481769 |
taaagttacaaatgttctaattcaggtcattttcttcatcatag |
30481726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30748068 - 30748025
Alignment:
| Q |
1 |
taaagttacaaatgttctaattcaggtcattttcttcatcatag |
44 |
Q |
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| T |
30748068 |
taaagttacaaatgttctaattcaggtcattttcttcatcatag |
30748025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 29870539 - 29870508
Alignment:
| Q |
114 |
ttgaatggttaggattgccttcaacacacaag |
145 |
Q |
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| T |
29870539 |
ttgaatggttaggattgccttcaacacacaag |
29870508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 29870612 - 29870580
Alignment:
| Q |
10 |
aaatgttctaattcaggtcattttcttcatcat |
42 |
Q |
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| T |
29870612 |
aaatgttctaattcaggtaattttcttcatcat |
29870580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 20298402 - 20298434
Alignment:
| Q |
10 |
aaatgttctaattcaggtcattttcttcatcat |
42 |
Q |
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| T |
20298402 |
aaatgttctaattcaggtaattttcttcatcat |
20298434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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