View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7894_high_1 (Length: 1047)
Name: NF7894_high_1
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_high_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 13 - 529
Target Start/End: Original strand, 28318850 - 28319361
Alignment:
| Q |
13 |
tttggtgttagtggagatagatgcagccaaaatatttgaaaattcaaacatatttaattgactttaaattgtatatataattatgttcagatttataaat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
28318850 |
tttggtgttagtggagatagatgcagccaaaatatttgaaaattcaaacatatttaattgactttaaattgtacatataattatgttcagatttataaat |
28318949 |
T |
|
| Q |
113 |
gttactatatgcatattttggtataaattaattgtaagataggacaaagtggcaaaccacaagaaagacatagctcttcattaaaagttttcacactact |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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|
| T |
28318950 |
gttactatatgcatattttggtataaattaattgtaagataggacaaagtggcaaaccacaagaaagacatagctcttcattaaaagttttcacgctgct |
28319049 |
T |
|
| Q |
213 |
acattatagcaactaattaaattgaaagagacgcatatcatcaccatcagactcaatttatgcacatgtcgaacatgtgaaaaataaaattattgttata |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||| |
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|
| T |
28319050 |
acattatagcaactaattaaattgaaagagacgcatatcatcaccatcagactcagtttatgcacatgtc-aacatgtgaaaaataaaattcttgtta-- |
28319146 |
T |
|
| Q |
313 |
attaaaagcataagcatgtggttcatgcacaactaataataattgaagttgaagtccacggagaatcaaacataacacttctacaatgtcactttattat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28319147 |
--taaaagcataagcatgtggttcatgcacaactaataataattgaagttgaagtccacggagaatcaaacataacacttctacaatgtcactttattat |
28319244 |
T |
|
| Q |
413 |
gtttggattctctagagcgtccaacacagtttttggatgaaggtgctcttagatctgaatttgaaaactatgattgtgcaacaatcacagaagatgttgt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28319245 |
gtttggattctctagagcgtccaacacagtttttggatgaaggtgctcttagatctgaatttgaaaactatgattgtgcaacaatcacagaagatgttgt |
28319344 |
T |
|
| Q |
513 |
tacatgactataacaac |
529 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
28319345 |
tatatgactataacaac |
28319361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 546 - 1030
Target Start/End: Original strand, 28319454 - 28319938
Alignment:
| Q |
546 |
tattttgcagtgtaattacaaccgcgattgcaagtgcaatttacaacaacattcgtgacccaaccgtaaaccatatactcttttacccttctccttaggc |
645 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28319454 |
tattttggagtgtaattacaaccgcgattgcaagtgcaatttacaacaacattcgtgacccaaccataaaccatatactcttttacccttctccttaggc |
28319553 |
T |
|
| Q |
646 |
tgatgaaatagcttgaactcgaagaggttggaccctctttaaggttaatccaaattgttcgtccatgttcaattgttccggtattagcccaccagcaaga |
745 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28319554 |
tgatgaaatagcttgaactcgaagaggttggaccctctttaaggttaatccaaattgttcgtccatgttcaattgttccggtattagcccatcagcaaga |
28319653 |
T |
|
| Q |
746 |
ttccattcaaaattgtgtagaagggatgccaccattaaatgcatagttctatgagctaatggcaatcctggacaaattcttttgccagctccaaagggta |
845 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28319654 |
ttccattcaaaattgtgtagaagggatgccaccattaaatgcatagttctatgagctaatggcaatcctggacaaattcttttgccagctccaaagggta |
28319753 |
T |
|
| Q |
846 |
taagctcaaaattgctacccatatacttaatgtcacactctaaaaatctttcaggtgcaaacatatctggatttttccaaattgttggatctctccccat |
945 |
Q |
| |
|
||||||||||||| |||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28319754 |
taagctcaaaattattacctttatagttaatgtcacactccaaaaatctttcaggtgcaaacatatctggatttttccaaatggttggatctctccccat |
28319853 |
T |
|
| Q |
946 |
agcccacacattgactagtacttgtgcattttttggcacattaaagcctaatatgttcacaagctcatcacatttgtgaggtaac |
1030 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28319854 |
agcccacacattgactagtacttgtgcattttttggcacattaaagcctaatatgttcacaagctcatcacatttgtgaggtaac |
28319938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 644 - 1028
Target Start/End: Original strand, 28306717 - 28307101
Alignment:
| Q |
644 |
gctgatgaaatagcttgaactcgaagaggttggaccctctttaaggttaatccaaattgttcgtccatgttcaattgttccggtattagcccaccagcaa |
743 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| | || ||||| ||| | ||| || ||| |||| |||||| |
|
|
| T |
28306717 |
gctgatgaaatagcttgaactcgaagagattggaccctctttaatgttaccccaaatcgctcatccatactcatgtcttctggatttaacccatcagcaa |
28306816 |
T |
|
| Q |
744 |
gattccattcaaaattgtgtagaagggatgccaccattaaatgcatagttctatgagctaatggcaatcctggacaaattcttttgccagctccaaaggg |
843 |
Q |
| |
|
| |||||||||||||| |||||||||||||||| |||||||||| | | ||||||||||||||||||||||| ||||||||||||||||| ||||| || |
|
|
| T |
28306817 |
gtgtccattcaaaattgcgtagaagggatgccacaattaaatgcacactcctatgagctaatggcaatcctgggcaaattcttttgccagccccaaatgg |
28306916 |
T |
|
| Q |
844 |
tataagctcaaaattgctacccatatacttaatgtcacactctaaaaatctttcaggtgcaaacatatctggatttttccaaattgttggatctctcccc |
943 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||| ||| |||||||||||||| ||||| ||| |||||||| |||||| ||||||||||| ||| |
|
|
| T |
28306917 |
tataagctcaaaattgttacccttataattaatgtcacgctccaaaaatctttcaggctcaaacttatttggattttcccaaatagttggatctcttccc |
28307016 |
T |
|
| Q |
944 |
atagcccacacattgactagtacttgtgcattttttggcacattaaagcctaatatgttcacaagctcatcacatttgtgaggta |
1028 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| | |||||||||||||| |||| |
|
|
| T |
28307017 |
atggcccacacattgactaatacttgtgcattttttggcacattgaagcctgatatgttcaaattttcatcacatttgtggggta |
28307101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 657 - 1006
Target Start/End: Original strand, 28295732 - 28296081
Alignment:
| Q |
657 |
cttgaactcgaagaggttggaccctctttaaggttaatccaaattgttcgtccatgttcaattgttccggtattagcccaccagcaagattccattcaaa |
756 |
Q |
| |
|
||||||||||||||| ||| | | |||||| |||| ||||||||| || | ||| |||| | ||| || |||||||| ||||||| |||||||||| |
|
|
| T |
28295732 |
cttgaactcgaagagattgaatcatctttagagttattccaaattgctccttcatattcatgtcttctggctttagcccatcagcaagtgtccattcaaa |
28295831 |
T |
|
| Q |
757 |
attgtgtagaagggatgccaccattaaatgcatagttctatgagctaatggcaatcctggacaaattcttttgccagctccaaagggtataagctcaaaa |
856 |
Q |
| |
|
|||| ||||||| ||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
28295832 |
attgcgtagaagagatgctacaatcaaatgcatagttctatgagctaatggcaaccctggacaaattcttttgcctgctccaaacggtataagctcaaaa |
28295931 |
T |
|
| Q |
857 |
ttgctacccatatacttaatgtcacactctaaaaatctttcaggtgcaaacatatctggatttttccaaattgttggatctctccccatagcccacacat |
956 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
28295932 |
ttgctacccatatacttaatgtcacactccaaaaatctttcaggcataaacatatctggatttttccaaatggttggatctcttcccatggcccacacat |
28296031 |
T |
|
| Q |
957 |
tgactagtacttgtgcattttttggcacattaaagcctaatatgttcaca |
1006 |
Q |
| |
|
|||||| || |||||||| |||| ||||| | |||||||||||| ||||| |
|
|
| T |
28296032 |
tgactaatatttgtgcatgtttttgcacaatgaagcctaatatgctcaca |
28296081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 657 - 1020
Target Start/End: Complemental strand, 28291234 - 28290871
Alignment:
| Q |
657 |
cttgaactcgaagaggttggaccctctttaaggttaatccaaattgttcgtccatgttcaattgttccggtattagcccaccagcaagattccattcaaa |
756 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||| |||||| | || ||||| |||| ||||| | |||||||| | ||||| |||||||||| |
|
|
| T |
28291234 |
cttgaactcgaagaggttgtactctctttaaggataacccaaatcgctcctccatattcatatgttctgactttagcccatccgcaagtatccattcaaa |
28291135 |
T |
|
| Q |
757 |
attgtgtagaagggatgccaccattaaatgcatagttctatgagctaatggcaatcctggacaaattcttttgccagctccaaagggtataagctcaaaa |
856 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| | | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28291134 |
gttgtgtagaagggatgccacaattaagtgcacattcctatgagctaatgacaatcctggacaaattcttttgccagctccaaagggtataagctcaaaa |
28291035 |
T |
|
| Q |
857 |
ttgctacccatatacttaatgtcacactctaaaaatctttcaggtgcaaacatatctggatttttccaaattgttggatctctccccatagcccacacat |
956 |
Q |
| |
|
| | | ||| |||| |||||||||||||| ||||||||||| || ||||||| ||||||||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
28291034 |
tggttgcccttataattaatgtcacactccaaaaatctttcgggcatgaacatatttggatttttccaaatggttggatctcttcccatagcccatacat |
28290935 |
T |
|
| Q |
957 |
tgactagtacttgtgcattttttggcacattaaagcctaatatgttcacaagctcatcacattt |
1020 |
Q |
| |
|
| |||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
28290934 |
taactattacttgtgcattttttggcacattgaagcctaatatgttcacactttcatcacattt |
28290871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 654 - 1021
Target Start/End: Original strand, 28328408 - 28328775
Alignment:
| Q |
654 |
tagcttgaactcgaagaggttggaccctctttaaggttaatccaaattgttcgtccatgttcaattgttccggtattagcccaccagcaagattccattc |
753 |
Q |
| |
|
|||||||||||||||||| ||| | |||| ||||||||| ||||||||||||||||| |||| | ||| || |||||||| ||||||| ||||| || |
|
|
| T |
28328408 |
tagcttgaactcgaagagtttgaatcctccttaaggttagcccaaattgttcgtccatattcatgtcttctggctttagcccatcagcaagtttccaatc |
28328507 |
T |
|
| Q |
754 |
aaaattgtgtagaagggatgccaccattaaatgcatagttctatgagctaatggcaatcctggacaaattcttttgccagctccaaagggtataagctca |
853 |
Q |
| |
|
||| ||| ||||||||||||||| ||||| |||| | | |||||||||||||||||||| |||||||||||||| || || ||||| ||||| |||||| |
|
|
| T |
28328508 |
aaagttgcatagaagggatgccacaattaagtgcacattcctatgagctaatggcaatcccggacaaattcttttacctgccccaaaaggtatgagctca |
28328607 |
T |
|
| Q |
854 |
aaattgctacccatatacttaatgtcacactctaaaaatctttcaggtgcaaacatatctggatttttccaaattgttggatctctccccatagcccaca |
953 |
Q |
| |
|
||||| ||||| |||| ||||||||||| || |||||||||||||| ||||||| || ||||| ||| || ||||||||||| ||||| ||||| | |
|
|
| T |
28328608 |
aaattattacccttataattaatgtcacattccaaaaatctttcaggcttgaacatatttgaattttcccatatggttggatctcttcccatggcccata |
28328707 |
T |
|
| Q |
954 |
cattgactagtacttgtgcattttttggcacattaaagcctaatatgttcacaagctcatcacatttg |
1021 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| ||||||||||| |||||||||||| |
|
|
| T |
28328708 |
aattgactagtatttgtgcattttttggcacattgaagcctgatatgttcacattttcatcacatttg |
28328775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 649 - 998
Target Start/End: Original strand, 28302594 - 28302943
Alignment:
| Q |
649 |
tgaaatagcttgaactcgaagaggttggaccctctttaaggttaatccaaattgttcgtccatgttcaattgttccggtattagcccaccagcaagattc |
748 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| || || || |||| | ||| ||| ||| ||| || ||| || |
|
|
| T |
28302594 |
tgaaatagcttgaactcgaagaggttgaaccctctttaatgttaacccaaattgctcttctatattcatgtcttctggttttaatccatcaacaaatgtc |
28302693 |
T |
|
| Q |
749 |
cattcaaaattgtgtagaagggatgccaccattaaatgcatagttctatgagctaatggcaatcctggacaaattcttttgccagctccaaagggtataa |
848 |
Q |
| |
|
|||||||||||| |||||||||||| ||| |||||||||| |||||||| |||||||||| |||| ||||||||||||| || ||||||||||||| |
|
|
| T |
28302694 |
cattcaaaattgcgtagaagggatgtcacaattaaatgcactaccctatgagccaatggcaatcatggaaaaattcttttgcctgccccaaagggtataa |
28302793 |
T |
|
| Q |
849 |
gctcaaaattgctacccatatacttaatgtcacactctaaaaatctttcaggtgcaaacatatctggatttttccaaattgttggatctctccccatagc |
948 |
Q |
| |
|
| |||||||| ||||| |||| |||||||||||||| |||||||||| |||| || | || ||||||| ||||| ||||| ||||| ||||| || |
|
|
| T |
28302794 |
gttcaaaattattacccttataattaatgtcacactccaaaaatctttgaggtatgaatacatttggatttgcccaaacggttgggtctcttcccatggc |
28302893 |
T |
|
| Q |
949 |
ccacacattgactagtacttgtgcattttttggcacattaaagcctaata |
998 |
Q |
| |
|
| |||||||||||| || |||||||||||| | |||||| || ||||||| |
|
|
| T |
28302894 |
ctacacattgactaatatttgtgcatttttcgacacattgaaacctaata |
28302943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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