View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7894_high_13 (Length: 456)
Name: NF7894_high_13
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_high_13 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-150; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 49 - 456
Target Start/End: Original strand, 10000851 - 10001232
Alignment:
| Q |
49 |
gttacattttattcttgtaaattctatttctgttgttgattgttgaaatgaattagcagtggtcggcttcatggtattacgggccgttagattaataaac |
148 |
Q |
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| T |
10000851 |
gttacattttattcttgtaaattctatttctgttgttgattgttgatatgaattagcagtggtcggcttcatggtattacgggccgttagattaataaac |
10000950 |
T |
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| Q |
149 |
ttttcatctaatggcgtgcatccatccaactttataggaaagtcggatatatgataaagccgatcgctgaggatcgaagtttttgtttattggttgattg |
248 |
Q |
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| T |
10000951 |
ttttcatctaacgtcctccatccatccaactttattggaaagtcggatatatgatcaagccgattgctgaggatcgaagtttttgtttattggttgattg |
10001050 |
T |
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| Q |
249 |
caaatataatttcatgactaaactagaaatgggtctagaactattttatgaatggttttgttttccatgatgttttttaattaccaaacattggtttagc |
348 |
Q |
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| T |
10001051 |
caaata-aatttcatgaccaaactagaaatgggtctagaactattttatgaatggttttgttttccatgatgttttttaattaccaaacattggtt---- |
10001145 |
T |
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| Q |
349 |
tagttgcttattttctttaacgataaggatgtttgatttgttattggacatgtttgtttatgtcttgtcccttcttctctagaacttttttcatttggat |
448 |
Q |
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| T |
10001146 |
tagttgcttattttcatt-----------------atttgttattggaca----tgtttatgtcttgtcccttcttctctagaacttttttcatttggat |
10001224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 73 - 309
Target Start/End: Original strand, 9995093 - 9995322
Alignment:
| Q |
73 |
tatttctgttgttgattgttgaaatgaattagcagtggtcggcttcatggtattacgggccgttagattaataaacttttcatctaatggcgtgcatcca |
172 |
Q |
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| T |
9995093 |
tatttctgttgttgattgttgaaatgaatcagcagtagtcagcttcatggtactacaaaccgttagattaataaaatttgcatctaacggcctgcatccg |
9995192 |
T |
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| Q |
173 |
tccaactttataggaaagtcggatatatgataaagccgatcgctgaggatcgaagtttttgtttattggttgattgcaaatataatttcatgactaaact |
272 |
Q |
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| T |
9995193 |
tccgactttataggaaagacggatatacaataaagccgaccgttgaggatcaaattttttgtttattgg----ttgcaaata-aacttcatgactaaaat |
9995287 |
T |
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| Q |
273 |
agaaatgggtctagaactattttatgaatggttttgt |
309 |
Q |
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| T |
9995288 |
tgaaatgggtct--aactattttatgaatggttttgt |
9995322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 135 - 452
Target Start/End: Original strand, 9988787 - 9989110
Alignment:
| Q |
135 |
ttagattaataaacttttcatctaatggcgtgcatccatccaactttatagga--aagtcggatatatgataaagccgatcgctgaggatcgaagttttt |
232 |
Q |
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| T |
9988787 |
ttagactaataaacttttaatctaacggcttgcatccatccgacctgatacaataaagtcggatatatcttaaagccgactgttgagaatcgaagttttc |
9988886 |
T |
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| Q |
233 |
gtttattggttgattgcaaatataatttcatgactaaactagaaatgggtctaga-------actattttatgaatggttttgttttccatgatgttttt |
325 |
Q |
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| T |
9988887 |
gtttattggtgga----aaata-aatttcaggactaaaattgtaatgggtctaggcgctagcactatttgatgaatggttttgtattctatgatgttttt |
9988981 |
T |
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| Q |
326 |
taattaccaaacattggtttagctagttgcttattttcttta-----acgataaggatgtttgatttgttattggacatgtttgtttatgtc-ttgtccc |
419 |
Q |
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| T |
9988982 |
taattaccaaacattggtt----tagttgtttattttcattaataatatgataaggatgtttgatttgttaatggacatgcatgtttatgtctttttccc |
9989077 |
T |
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| Q |
420 |
t--tcttctctagaacttttttcatttggattttg |
452 |
Q |
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| T |
9989078 |
ttgtcttctctagaac--ttttcatttggattttg |
9989110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 10010525 - 10010647
Alignment:
| Q |
119 |
atggtattacgggccgttagattaataaacttttcatctaatggcgtgcatccatccaactttataggaaagtcggatatatgataaagccgatcgctga |
218 |
Q |
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| T |
10010525 |
atggtattataggtcgttatattaataaacttttaatcaaacggcttgtatccatccggtttaaaagtaaaatcggatataccataaagccgaccgttga |
10010624 |
T |
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| Q |
219 |
ggatcgaagtttttgtttattgg |
241 |
Q |
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| T |
10010625 |
agatctaagtttttgtttattgg |
10010647 |
T |
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