View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7894_high_14 (Length: 452)
Name: NF7894_high_14
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 40 - 441
Target Start/End: Complemental strand, 36465409 - 36465012
Alignment:
| Q |
40 |
accaaccatttgtcacatatgaggatgtcatatacattcatcatatctgctaccaaatccactccaacattatgaacgtttacataaaacttgctgcaaa |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36465409 |
accaaccatttgtcacatatgaggatgtcatatactttcatcatatctgctaccaaatccactccaacattatgaacgtttacataaaacttgctgcata |
36465310 |
T |
|
| Q |
140 |
tacaaatatatacataagccaattaaagaactaattagcctggttttacatatacacaaagacatatatgaaatatatttttagaactgaaaatgaaaag |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36465309 |
tacaaatatatacataagccaattaaagaactaattagcatggttttacatatacacaaagacatatatgaaatatatttttagaactgaaaatgaaaag |
36465210 |
T |
|
| Q |
240 |
cattgataaaacctcaaaacttgaggcaaataaattaaactcttcggataaaacctttaatttcaaaggttcatgccacaattggttttgcacagcaagt |
339 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36465209 |
cattgataaaacctc-aaacttgaggcaaataaattaaactctttggataaaacctttaatttcaaaggttcatgccacaattggttttgcacagcaagt |
36465111 |
T |
|
| Q |
340 |
tgaaagcatgccaaatgaatgataataaatagacaacatacaaaacacattagcatcagaacaatcaagaatatggcatgaagaacaaaatgagaaaggt |
439 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36465110 |
tgaaagcatgcaaaatgaatg---ataaatagacaacatacaaaacacattagcatcagaacaatcaagaatatggcatgaagaacaaaatgagaaatgt |
36465014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University