View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7894_high_17 (Length: 416)

Name: NF7894_high_17
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7894_high_17
NF7894_high_17
[»] chr6 (5 HSPs)
chr6 (183-253)||(24184656-24184726)
chr6 (295-393)||(24184399-24184499)
chr6 (122-168)||(6429946-6429992)
chr6 (183-249)||(20786735-20786801)
chr6 (295-348)||(8531929-8531982)
[»] chr3 (6 HSPs)
chr3 (183-253)||(408174-408244)
chr3 (183-253)||(415698-415768)
chr3 (295-393)||(407917-408017)
chr3 (295-393)||(415925-416025)
chr3 (183-253)||(38792539-38792609)
chr3 (183-249)||(49962443-49962509)
[»] chr1 (4 HSPs)
chr1 (183-253)||(24357553-24357623)
chr1 (183-253)||(24345175-24345245)
chr1 (295-393)||(24357780-24357880)
chr1 (355-393)||(24345569-24345607)
[»] chr2 (5 HSPs)
chr2 (120-183)||(15231110-15231172)
chr2 (31-94)||(15231185-15231248)
chr2 (183-249)||(15047284-15047350)
chr2 (183-249)||(38176484-38176550)
chr2 (121-183)||(15050297-15050361)
[»] chr5 (1 HSPs)
chr5 (183-249)||(42632864-42632930)


Alignment Details
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 24184726 - 24184656
Alignment:
Q  183 ttcaattcaaatgaagaacatcttggtgaagaacatcaggtgcaaatatagattttggtgttgttttattt 253  Q
    |||||| ||||| |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||    
T  24184726 ttcaatccaaatcaagaacatcttggtgaagaaaacaaggtgcaaatatagattttggtgttgttttattt 24184656  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 393
Target Start/End: Complemental strand, 24184499 - 24184399
Alignment:
Q  295 tttgtaggaacaacatcgtatgaaagatcggctcaatcatcatagagacacaagttaaat--tccagccatcaaaagccaagattaagacactgttgtta 392  Q
    |||| |||||| ||| | |||||| ||||  | ||||||||| ||||||| ||||| |||  ||||||||||||||||||||||||||||||||||||||    
T  24184499 tttgaaggaacgacaccatatgaaggatcaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagattaagacactgttgtta 24184400  T
Q  393 c 393  Q
    |    
T  24184399 c 24184399  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 6429992 - 6429946
Alignment:
Q  122 tttcacgctcttgcctttgtgaatcaggtctcatattcatcctcaca 168  Q
    ||||||||||||||||||||||||||||| ||  |||||||||||||    
T  6429992 tttcacgctcttgcctttgtgaatcaggtttctgattcatcctcaca 6429946  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 20786801 - 20786735
Alignment:
Q  183 ttcaattcaaatgaagaacatcttggtgaagaacatcaggtgcaaatatagattttggtgttgtttt 249  Q
    |||||| ||||| |||||||| ||||| ||| | |  ||||||||||||||||||||||||||||||    
T  20786801 ttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatatagattttggtgttgtttt 20786735  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 8531982 - 8531929
Alignment:
Q  295 tttgtaggaacaacatcgtatgaaagatcggctcaatcatcatagagacacaag 348  Q
    ||||||||||||| ||| ||||||||||| || |||| | ||||||||||||||    
T  8531982 tttgtaggaacaatatcatatgaaagatcagcacaataaccatagagacacaag 8531929  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 408244 - 408174
Alignment:
Q  183 ttcaattcaaatgaagaacatcttggtgaagaacatcaggtgcaaatatagattttggtgttgttttattt 253  Q
    |||||| ||||| |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||    
T  408244 ttcaatccaaatcaagaacatcttggtgaagaaaacaaggtgcaaatatagattttggtgttgttttattt 408174  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 415698 - 415768
Alignment:
Q  183 ttcaattcaaatgaagaacatcttggtgaagaacatcaggtgcaaatatagattttggtgttgttttattt 253  Q
    |||||| ||||| |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||    
T  415698 ttcaatccaaatcaagaacatcttggtgaagaaaacaaggtgcaaatatagattttggtgttgttttattt 415768  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 393
Target Start/End: Complemental strand, 408017 - 407917
Alignment:
Q  295 tttgtaggaacaacatcgtatgaaagatcggctcaatcatcatagagacacaagttaaat--tccagccatcaaaagccaagattaagacactgttgtta 392  Q
    |||| |||||| ||| | |||||| ||||  | ||||||||| ||||||| ||||| |||  |||||||||||||||||||||||||||||||| |||||    
T  408017 tttgaaggaacgacaccatatgaaggatcaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagattaagacactgctgtta 407918  T
Q  393 c 393  Q
    |    
T  407917 c 407917  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 393
Target Start/End: Original strand, 415925 - 416025
Alignment:
Q  295 tttgtaggaacaacatcgtatgaaagatcggctcaatcatcatagagacacaagttaaat--tccagccatcaaaagccaagattaagacactgttgtta 392  Q
    |||| |||||| ||| | |||||| ||||  | ||||||||| ||||||| ||||| |||  |||||||||||||||||||||||||||||||| |||||    
T  415925 tttgaaggaacgacaccatatgaaggatcaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagattaagacactgctgtta 416024  T
Q  393 c 393  Q
    |    
T  416025 c 416025  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 38792609 - 38792539
Alignment:
Q  183 ttcaattcaaatgaagaacatcttggtgaagaacatcaggtgcaaatatagattttggtgttgttttattt 253  Q
    |||||| ||||| |||| ||||||||||||| | |  |||| ||||||||||||||| |||||||||||||    
T  38792609 ttcaatccaaattaagatcatcttggtgaagtaaacaaggttcaaatatagattttgatgttgttttattt 38792539  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 49962443 - 49962509
Alignment:
Q  183 ttcaattcaaatgaagaacatcttggtgaagaacatcaggtgcaaatatagattttggtgttgtttt 249  Q
    |||||| ||||| |||||||| ||||| ||| | |  ||||| ||||||||||||||||||||||||    
T  49962443 ttcaatccaaatcaagaacattttggtcaagtaaacaaggtgtaaatatagattttggtgttgtttt 49962509  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 24357553 - 24357623
Alignment:
Q  183 ttcaattcaaatgaagaacatcttggtgaagaacatcaggtgcaaatatagattttggtgttgttttattt 253  Q
    |||||| ||||| |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||    
T  24357553 ttcaatccaaatcaagaacatcttggtgaagaaaacaaggtgcaaatatagattttggtgttgttttattt 24357623  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 24345175 - 24345245
Alignment:
Q  183 ttcaattcaaatgaagaacatcttggtgaagaacatcaggtgcaaatatagattttggtgttgttttattt 253  Q
    |||||| ||||| ||||| |||||||||||||| |  ||||||||||||||||||||||||||||||||||    
T  24345175 ttcaatccaaatcaagaatatcttggtgaagaaaacaaggtgcaaatatagattttggtgttgttttattt 24345245  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 393
Target Start/End: Original strand, 24357780 - 24357880
Alignment:
Q  295 tttgtaggaacaacatcgtatgaaagatcggctcaatcatcatagagacacaagttaaat--tccagccatcaaaagccaagattaagacactgttgtta 392  Q
    |||| |||||| ||| | |||||| ||||  | ||||||||| ||||||| ||||| |||  |||||||||||||||||||||||||||||||| |||||    
T  24357780 tttgaaggaacgacaccatatgaaggatcaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagattaagacactgctgtta 24357879  T
Q  393 c 393  Q
    |    
T  24357880 c 24357880  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 24345569 - 24345607
Alignment:
Q  355 tccagccatcaaaagccaagattaagacactgttgttac 393  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  24345569 tccagccatcaaaagccaagattaagacactgctgttac 24345607  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 15231172 - 15231110
Alignment:
Q  120 gttttcacgctcttgcctttgtgaatcaggtctcatattcatcctcacaactctgtttttgctt 183  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||    
T  15231172 gttttcacgctcttgcctt-gtgagtcaggtctcatattcatcctcacaactctgttcttgctt 15231110  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 15231248 - 15231185
Alignment:
Q  31 tcaccactcctgccgcttgcccgcaaagcaactaatttgatttgaattcaatctcgtttgttgt 94  Q
    |||||||||||||||||| ||||| |||| |  ||| |||||||||||||||||||||||||||    
T  15231248 tcaccactcctgccgctttcccgcgaagcgaagaatctgatttgaattcaatctcgtttgttgt 15231185  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 15047350 - 15047284
Alignment:
Q  183 ttcaattcaaatgaagaacatcttggtgaagaacatcaggtgcaaatatagattttggtgttgtttt 249  Q
    |||||| ||||| |||||||| ||||| ||| | |  ||||||||||||||||||||||||||||||    
T  15047350 ttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatatagattttggtgttgtttt 15047284  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 38176550 - 38176484
Alignment:
Q  183 ttcaattcaaatgaagaacatcttggtgaagaacatcaggtgcaaatatagattttggtgttgtttt 249  Q
    |||||| ||||| |||||||| ||||| ||| | |  ||||||||||||||||||||||||||||||    
T  38176550 ttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatatagattttggtgttgtttt 38176484  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 15050361 - 15050297
Alignment:
Q  121 ttttcacgctcttgcctttgtgaatcaggtctcatattcatcctca--caactctgtttttgctt 183  Q
    |||||||||||||| || | ||||||||||||||||||||| ||||   ||||||||||||||||    
T  15050361 ttttcacgctcttgtctctttgaatcaggtctcatattcattctcatgtaactctgtttttgctt 15050297  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 42632930 - 42632864
Alignment:
Q  183 ttcaattcaaatgaagaacatcttggtgaagaacatcaggtgcaaatatagattttggtgttgtttt 249  Q
    |||||| ||||| |||||||| ||||| ||| | |  |||||||||||| |||||||||||||||||    
T  42632930 ttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatattgattttggtgttgtttt 42632864  T

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