View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7894_high_2 (Length: 664)
Name: NF7894_high_2
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 532; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 27 - 570
Target Start/End: Original strand, 41131957 - 41132500
Alignment:
| Q |
27 |
ttactcttccgtcaaccaaatcctgtgcgccaatgttaacaactgtgcatccaatagccttggccgaattgaggcatagagtatggttctcatttctctc |
126 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41131957 |
ttactcttccgtcaaccaagtcctgtgcgccaatgttaacaactgtgcatccaatagccttggccgaattgaggcatagagtatggttctcatttctctc |
41132056 |
T |
|
| Q |
127 |
ccaaagagaaagatttcgttttgtattgatggctcgctcgtctatagtcccaggcacagcaacattgataagcttactgcaatgaacgtgacataaatca |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41132057 |
ccaaagagaaagatttcgttttgtattgatggctcgctcgtctatagtcccaggcacagcaacattgataagcttactgcaatgaacatgacataaatca |
41132156 |
T |
|
| Q |
227 |
aacccggtattatattaaaggctagtacagacagaagtaaaatgcgaaaaatcagcagaccctggttatataccacagaagaatgccatcttttgaaaga |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41132157 |
aacccggtattatattaaaggctagtacagacagaagtaaaatgcgaaaaatcagcagaccctggttatataccacagaagaatgccatcttttgaaaga |
41132256 |
T |
|
| Q |
327 |
tcaaatagatcatttgtagctggatccaaaggaagatattgactcaagaatggatcatcaccaagatagctgtttatgtgagcaacatagaagccctttt |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41132257 |
tcaaatagatcatttgtagctggatccaaaggaagatattgactcaagaatggatcatcaccaaggtagctgtttatgtgagcaacatagaagccctttt |
41132356 |
T |
|
| Q |
427 |
ctgatccactaatcgtgtgaagaagggtagttatgctttcgttaaggaatgatgaggagtgcttcaatccaccctgtttctttgtagctaggcttcgcaa |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41132357 |
ctgatccactaatcgtgtgaagaagggtagttatgctttcgttaaggaatgatgaggagtgcttcaatccaccctgtttctttgtagctaggcttcgcaa |
41132456 |
T |
|
| Q |
527 |
attcaaatatacctgcatgaaaaatgtgttatagattaaaatgt |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41132457 |
attcaaatatacctgcatgaaaaatgtgttatagattaaaatgt |
41132500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 568 - 654
Target Start/End: Original strand, 41132637 - 41132723
Alignment:
| Q |
568 |
tgtcacaatgttagaaagccatactaaaaccatcttttctctaatatttttgccaccattcactaattctttaaattggttctgatg |
654 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41132637 |
tgtcacaatgttagaaagccatactaaaaccatcttttctctaatatttttgccaccattcactaattctttaaattggttcagatg |
41132723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 42967838 - 42967659
Alignment:
| Q |
28 |
tactcttccgtcaaccaaatcctgtgcgccaatgttaacaactgtgcatccaatagccttggccgaattgaggcatagagtatggttctcatttctctcc |
127 |
Q |
| |
|
||||||||| ||||||| |||||||| ||||| ||||| |||||||| ||||||||||| || |||||||||| || || ||||| ||||| |||||| |
|
|
| T |
42967838 |
tactcttccttcaaccatatcctgtgtaccaatattaaccactgtgcacccaatagcctttgctgaattgaggccaagggtgtggttttcattcctctcc |
42967739 |
T |
|
| Q |
128 |
caaagagaaagatttcgttttgtattgatggctcgctcgtctatagtcccaggcacagcaacattgataagcttactgca |
207 |
Q |
| |
|
|| || ||||| |||||||| || ||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
42967738 |
catggattaagatcccgttttgtgttaatggctcgctcatctattgtcccaggaacagcaacattaataagcttgctgca |
42967659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University