View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7894_high_20 (Length: 394)
Name: NF7894_high_20
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 52437092 - 52437360
Alignment:
| Q |
11 |
agaatattgtgatccaattaatcaatctcctctggcccgcagctctcttcttcagatccgatttgatatggaaatactatttcatggaagctagccatga |
110 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52437092 |
agaatattgtgatccgattaatc----tcctctggcccgcagctctcttcttcagatccgatttgatatggaaatcctatttcatggaagctagccatga |
52437187 |
T |
|
| Q |
111 |
aattcttactttatacacttttttcctgttatatatgttgttggaatataatgtggcatattatagtgaactagattgtgttcgaaagtgttggtccatc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
52437188 |
aattcttactttatacacttttttcctgttatatatattgttggaatataatgtggtatattatagtgaactagattgtgttcg-aagtgttggtccatc |
52437286 |
T |
|
| Q |
211 |
atccaaaaattcgaaccaatagaccgaaactctcaatgacttataaacaaatacctattattcactatatatat |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52437287 |
atccaaaaattcgaaccaatagaccgaaactctcaacgacttataaacaaatacctattattcactatatatat |
52437360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 276 - 379
Target Start/End: Original strand, 52437725 - 52437828
Alignment:
| Q |
276 |
tatatatattctaagtgtatgagattgtattattttctctattatgcaagagatatatatttctttcctaaatctaagagcataatcatatgattcaact |
375 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
52437725 |
tatatatattctaagtgtctgagattgtattattttctctattatgcaagagatatatatttctttcctaattctaagagcataatcgtatgattcaact |
52437824 |
T |
|
| Q |
376 |
atgt |
379 |
Q |
| |
|
|||| |
|
|
| T |
52437825 |
atgt |
52437828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University