View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7894_high_22 (Length: 369)
Name: NF7894_high_22
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 42510933 - 42510604
Alignment:
| Q |
12 |
agtgagaagaacacgaggagtgaaggagtgagtgtcatattcaaaataaggtgttaatgatgatggtgatggtgacagtggatctaattccaggtttgga |
111 |
Q |
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| T |
42510933 |
agtgataagaacacgaggagtgaaggagtgagtgtcatattcaaaataaggtgttaatgatgatggtga------cagtggatctgattccagatctgga |
42510840 |
T |
|
| Q |
112 |
gttgtcatgttcatgaggtaagaacgaacgattcaaattcggtgttgaattcagagttgtcatgttcatgaggttaagaacgaacgaacgtttggtttgg |
211 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42510839 |
gttgtcatgttcatgaggtaagaacgaacgattcagattcggtgttgaattcagagttgtcatgttcatgaggttaagaacgaacgaacgtttggtttgg |
42510740 |
T |
|
| Q |
212 |
attcggtgttgaagaacgagaacatcgactgggggttcagattcggtgttgaattcagggaagaacgagattaggatgaattagtgatggtgcgatggtg |
311 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
42510739 |
attcgatgttgaagaacgagaacatcgactggggtttcagattcggtgttgaattcaggaaagaacgagattaggatgaatcagtgatggtgcgatggtg |
42510640 |
T |
|
| Q |
312 |
atgaattagagattgagatggtattgtattcacgat |
347 |
Q |
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| T |
42510639 |
atgaattagagattgtgatggtgttgtattcacgat |
42510604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 35 - 347
Target Start/End: Complemental strand, 36510631 - 36510319
Alignment:
| Q |
35 |
aggagtgagtgtcatattcaaaataaggtgttaatgatgatggtgatggtgacagtggatctaattccaggtttggagttgtcatgttcatgaggtaaga |
134 |
Q |
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| T |
36510631 |
aggagtgagtgtcatattcaaaataaggtgttaatgatgatggtgatggtgacagtggatctgatttcagatctggagttgttatgttcatgaggtaaga |
36510532 |
T |
|
| Q |
135 |
acgaacgattcaaattcggtgttgaattcagagttgtcatgttcatgaggttaagaacgaacgaacgtttggtttggattcggtgttgaagaacgagaac |
234 |
Q |
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|||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
36510531 |
acgaacgatttagattcagtgttgaattcatagttgtcatgttcatgaggttaagaacgaacaaaggtttggtttggattcggtgttgaagaacgagaac |
36510432 |
T |
|
| Q |
235 |
atcgactgggggttcagattcggtgttgaattcagggaagaacgagattaggatgaattagtgatggtgcgatggtgatgaattagagattgagatggta |
334 |
Q |
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|||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
36510431 |
atcgaccggggtttcagattcggtgttgaactcagggaagaacgagattaggatgaatcagtgatggtgcgatggtgatgaattagagattgtgatggtg |
36510332 |
T |
|
| Q |
335 |
ttgtattcacgat |
347 |
Q |
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||||||||||||| |
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| T |
36510331 |
ttgtattcacgat |
36510319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 19465452 - 19465643
Alignment:
| Q |
12 |
agtgagaagaacacgaggagtgaaggagtgagtgtcatattcaaaataaggtgttaatgatgatggtgatggtgacagtggatctaattccaggtttgga |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||| | |||| |
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| T |
19465452 |
agtgataagaacacgaggagtgaaggagtgagtgtcatattcaaaataaggtgttaatgatgatggtggtggtgacggtggatctgattccagatctgga |
19465551 |
T |
|
| Q |
112 |
gttgtcatgttcatgaggtaagaacgaacgattcaaattcggtgttgaattcagagttgtcatgttcatgaggttaagaacgaacgaacgtt |
203 |
Q |
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| T |
19465552 |
gttgtcatgttcatgaggtaagaacaaacgattcagattcagtgttgaattcagagttgtcatgtccatgaggttaagaacgaacgaacgtt |
19465643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 19465647 - 19465738
Alignment:
| Q |
256 |
ggtgttgaattcagggaagaacgagattaggatgaattagtgatggtgcgatggtgatgaattagagattgagatggtattgtattcacgat |
347 |
Q |
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||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||| ||||||||||||| |
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| T |
19465647 |
ggtgttgaattcaagagagaacgagattaggatgaatcagtgatggtgcgatggtgatgaattagagattgtgacggtgttgtattcacgat |
19465738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 221 - 347
Target Start/End: Complemental strand, 34439028 - 34438902
Alignment:
| Q |
221 |
tgaagaacgagaacatcgactgggggttcagattcggtgttgaattcagggaagaacgagattaggatgaattagtgatggtgcgatggtgatgaattag |
320 |
Q |
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||||||||||||||||||| ||||| ||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34439028 |
tgaagaacgagaacatcgaatggggtttcagattcaatgttgaattcagagaagaacgagattaggatgaatcagtgatggtgcgatggtgatgaattag |
34438929 |
T |
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| Q |
321 |
agattgagatggtattgtattcacgat |
347 |
Q |
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|||||| |||||| ||||||||||||| |
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| T |
34438928 |
agattgtgatggtgttgtattcacgat |
34438902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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