View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7894_high_25 (Length: 333)
Name: NF7894_high_25
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 63 - 314
Target Start/End: Complemental strand, 1893296 - 1893040
Alignment:
| Q |
63 |
atgaaagtagtttatgacaagtccataagttgattccatagcttaaatgcaaaaattaaattaag-----cataccttccaatatgaagaatatcaccaa |
157 |
Q |
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| T |
1893296 |
atgaaagtagtttatgacaagtccataagttgattccatagcttaaatgcaaaaattaaattaaattaaccataccttccaatatgaagaatatcaccaa |
1893197 |
T |
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| Q |
158 |
ggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggttacatagacagcccccttcatgttcaatgaccatgcaatagctgt |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1893196 |
ggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggttacatagacagcccccttcatgttcaatgaccatgcaatagctgt |
1893097 |
T |
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| Q |
258 |
actgctgataaatttcccaaatataccctggaaaaagaaatgtgacatcaataaact |
314 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1893096 |
actgctgataaatttcccaaatatgccctggaaaaagaaatgtgacatcaataaact |
1893040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 1914270 - 1914154
Alignment:
| Q |
114 |
aaaattaaattaagcataccttccaatatgaagaatatcaccaaggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggtt |
213 |
Q |
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|||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||| || | |||||| ||||||||||| || ||||||||||||||| |
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| T |
1914270 |
aaaattgaattaaccataccttccaagatgaagagtatcaccaaggaatataactcccaaccaaacagagataacaatttgcagtggcttgaatgaggtt |
1914171 |
T |
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| Q |
214 |
acatagacagccccctt |
230 |
Q |
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| T |
1914170 |
acatagacagccccctt |
1914154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 1904158 - 1904041
Alignment:
| Q |
113 |
aaaaattaaattaagcataccttccaatatgaagaatatcaccaaggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggt |
212 |
Q |
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||||||| || ||| |||||||||||| ||||||| ||||||||||||||||||| || |||||| |||||||||||||||| || |||||||||||||| |
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| T |
1904158 |
aaaaattcaaataaccataccttccaacatgaagagtatcaccaaggaatataacacccaagccagcagaaataacaatttgaagtggcttgaatgaggt |
1904059 |
T |
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| Q |
213 |
tacatagacagccccctt |
230 |
Q |
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||||||||| |||||||| |
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| T |
1904058 |
tacatagactgccccctt |
1904041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 1908391 - 1908274
Alignment:
| Q |
113 |
aaaaattaaattaagcataccttccaatatgaagaatatcaccaaggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggt |
212 |
Q |
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||||||| || ||| |||||||||||| ||||||| ||||||||||||||||||| || |||||| |||||||||||||||| || |||||||||||||| |
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| T |
1908391 |
aaaaattcaaataaccataccttccaacatgaagagtatcaccaaggaatataacacccaagccagcagaaataacaatttgaagtggcttgaatgaggt |
1908292 |
T |
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| Q |
213 |
tacatagacagccccctt |
230 |
Q |
| |
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||||||||| |||||||| |
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| T |
1908291 |
tacatagactgccccctt |
1908274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 107 - 230
Target Start/End: Complemental strand, 1898959 - 1898836
Alignment:
| Q |
107 |
aaatgcaaaaattaaattaagcataccttccaatatgaagaatatcaccaaggaatataactcctaagccaacagaaataacaatttgtagaggcttgaa |
206 |
Q |
| |
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||||||||||||| |||| | ||||||||||| ||||||| |||||||||| || ||||| ||||||||| |||||||||||||||| || |||||||| |
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| T |
1898959 |
aaatgcaaaaattgaatttactataccttccaacatgaagagtatcaccaagaaacataacacctaagccagcagaaataacaatttgaagtggcttgaa |
1898860 |
T |
|
| Q |
207 |
tgaggttacatagacagccccctt |
230 |
Q |
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||||||||||||||| |||||||| |
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| T |
1898859 |
tgaggttacatagactgccccctt |
1898836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 1888392 - 1888274
Alignment:
| Q |
112 |
caaaaattaaattaagcataccttccaatatgaagaatatcaccaaggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgagg |
211 |
Q |
| |
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|||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||| | ||| ||||||||||||||||||| || ||||||||||| | |
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| T |
1888392 |
caaaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatg |
1888293 |
T |
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| Q |
212 |
ttacatagacagccccctt |
230 |
Q |
| |
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||||||||||||| ||||| |
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| T |
1888292 |
ttacatagacagctccctt |
1888274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 114 - 301
Target Start/End: Complemental strand, 1881090 - 1880903
Alignment:
| Q |
114 |
aaaattaaattaagcataccttccaatatgaagaatatcaccaaggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggtt |
213 |
Q |
| |
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|||||| ||| || |||||||||||| ||||||| ||||||||||||||||||| | ||| ||||||||| |||||||| || ||||||||||| ||| |
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| T |
1881090 |
aaaattgaataaaccataccttccaacatgaagagtatcaccaaggaatataacagccaaggcaacagaaaacacaatttggagtggcttgaatgatgtt |
1880991 |
T |
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| Q |
214 |
acatagacagcccccttcatgttcaatgaccatgcaatagctgtactgctgataaatttcccaaatataccctggaaaaagaaatgtg |
301 |
Q |
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||||||||||| ||||| | | ||||||||||||| | || ||||||| || ||||| ||||| || |||| |||| | ||||||| |
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| T |
1880990 |
acatagacagctccctttaagcgcaatgaccatgcataaactatactgcttattaattttccaaaaatcccctagaaatataaatgtg |
1880903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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