View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7894_high_29 (Length: 294)
Name: NF7894_high_29
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 53 - 223
Target Start/End: Complemental strand, 49162060 - 49161877
Alignment:
| Q |
53 |
ggattgaaatttgtttgggagcgtggcttcaaaagagtg-------------atttgaatttgattgtattgttagttcgatcaactctaataagtgtag |
139 |
Q |
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| T |
49162060 |
ggattgaagtttgtttgggagcgtggcttcaaaagagtggagcttcatgttgatttgagtttgattgtattgttagttagatcaactctaataagtgtag |
49161961 |
T |
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| Q |
140 |
agcagtgctggttgtattttgcttcaaaacattgaccgacttcttgtaatggattgaggttcttgtgaacatatttatagagaa |
223 |
Q |
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| T |
49161960 |
agcagtgctggttgtactttgcttcaaaaccttgactgacttcttataatggattgaggttcttgtgaacatatttatagagaa |
49161877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 49160183 - 49160113
Alignment:
| Q |
224 |
agtaaccaaacttttgaaagtgagcttttcctttataggcaacatggacaaaagttaccagagatgaatgt |
294 |
Q |
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| T |
49160183 |
agtaaccaaacttttaacagtgagcttttcctttataggcaacatggacaaaagttaccagagatgaatgt |
49160113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 49162107 - 49162070
Alignment:
| Q |
18 |
tatggtgttgtagtgcatttgtggtggaactttgggga |
55 |
Q |
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| T |
49162107 |
tatggtgttgtaatgcatttgtagtggaactttgggga |
49162070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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