View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7894_high_32 (Length: 280)

Name: NF7894_high_32
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7894_high_32
NF7894_high_32
[»] chr5 (7 HSPs)
chr5 (5-119)||(1347919-1348033)
chr5 (180-264)||(1347774-1347858)
chr5 (28-108)||(19806892-19806972)
chr5 (204-259)||(9619101-9619156)
chr5 (23-77)||(20111939-20111993)
chr5 (46-103)||(17377364-17377421)
chr5 (43-103)||(17383726-17383786)
[»] chr6 (1 HSPs)
chr6 (23-111)||(16258441-16258529)
[»] scaffold0009 (1 HSPs)
scaffold0009 (28-103)||(40589-40664)
[»] chr3 (1 HSPs)
chr3 (23-111)||(32226541-32226629)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 1348033 - 1347919
Alignment:
Q  5 agtttggtgttatgatgccatttatgattggggtgagatagtgaaaatgctcgagaattgtcctaaacttcaaactctctccatttcaaaggtttgtttc 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1348033 agtttggttttatgatgccatttatgattggggtgagatagtgaaaatgctcgagaattgtcctaaacttcaaactctctccatttcaaaggtttgtttc 1347934  T
Q  105 tcacgtccaagtata 119  Q
    |||||||||||||||    
T  1347933 tcacgtccaagtata 1347919  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 1347858 - 1347774
Alignment:
Q  180 gttaatagtggacgaagtttgcaaaaaccaaagcggattggatatgcccatatcatgttccttaatgtgtttcctctcatcttac 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  1347858 gttaatagtggacgaagtttgcaaaaaccaaagcggattggatatacccatatcatgttcctcaatgtgtttcctctcatcttac 1347774  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 19806892 - 19806972
Alignment:
Q  28 atgattggggtgagatagtgaaaatgctcgagaattgtcctaaacttcaaactctctccatttcaaaggtttgtttctcac 108  Q
    ||||||||| |||| |||||||||||||| | |||||||| ||||| ||||||||  | |||  |||||||||||| ||||    
T  19806892 atgattgggatgaggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgtttgtcac 19806972  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 9619101 - 9619156
Alignment:
Q  204 aaaccaaagcggattggatatgcccatatcatgttccttaatgtgtttcctctcat 259  Q
    ||||||||| |||||||| || |||| ||||||||||| |||||||||| ||||||    
T  9619101 aaaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcat 9619156  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 20111939 - 20111993
Alignment:
Q  23 catttatgattggggtgagatagtgaaaatgctcgagaattgtcctaaacttcaa 77  Q
    |||| |||| ||||||||| |||||||||||||| |||| ||||| |||||||||    
T  20111939 cattcatgactggggtgaggtagtgaaaatgctccagaaatgtcccaaacttcaa 20111993  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 17377364 - 17377421
Alignment:
Q  46 tgaaaatgctcgagaattgtcctaaacttcaaactctctccatttcaaaggtttgttt 103  Q
    ||||||||||  |||||||||| ||||||||||||||  |||||  ||||||||||||    
T  17377364 tgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgttt 17377421  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 17383726 - 17383786
Alignment:
Q  43 tagtgaaaatgctcgagaattgtcctaaacttcaaactctctccatttcaaaggtttgttt 103  Q
    |||||||||||||  |||||||||| | ||||||||||||  |||||  ||||||||||||    
T  17383726 tagtgaaaatgctacagaattgtcccatacttcaaactcttaccattctaaaggtttgttt 17383786  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 16258529 - 16258441
Alignment:
Q  23 catttatgattggggtgagatagtgaaaatgctcgagaattgtcctaaacttcaaactctctccatttcaaaggtttgtttctcacgtc 111  Q
    |||| ||||||||  |||| ||||| |||||||| | |||||||| |||||||||| ||| || ||||||||||||||||  |||||||    
T  16258529 cattcatgattggtatgaggtagtgcaaatgctccataattgtccgaaacttcaaagtctttcaatttcaaaggtttgttggtcacgtc 16258441  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 40589 - 40664
Alignment:
Q  28 atgattggggtgagatagtgaaaatgctcgagaattgtcctaaacttcaaactctctccatttcaaaggtttgttt 103  Q
    |||| ||| ||||| || ||||||||||| |||||||||| |||||||||||||| || |||  ||||||||||||    
T  40589 atgactggagtgaggtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgttt 40664  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 32226541 - 32226629
Alignment:
Q  23 catttatgattggggtgagatagtgaaaatgctcgagaattgtcctaaacttcaaactctctccatttcaaaggtttgtttctcacgtc 111  Q
    |||| ||||||||  |||| ||||| |||||||| |  ||||||| ||||||||||||||  | ||||||||||||||||  |||||||    
T  32226541 cattcatgattggtatgaggtagtgcaaatgctccattattgtcccaaacttcaaactcttccaatttcaaaggtttgttggtcacgtc 32226629  T

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