View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7894_high_33 (Length: 277)
Name: NF7894_high_33
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 49495973 - 49495718
Alignment:
| Q |
18 |
cataattgttccatttctagttgtgttctgtcaacaatgggaaaataacagaaccgcttcataagaaattggaaatttgatgaagctgtcaaaaaattta |
117 |
Q |
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| T |
49495973 |
cataattgttccatttctagttgtgttctgtcaacaatgggaaaataacagaaccgcttcataagaaattggaaatttgatgaagctatcaaaaaattta |
49495874 |
T |
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| Q |
118 |
agatagaattgattgnnnnnnnnnnnnagaggacgtagaattgatagttattaa------agcctaatctagaacaa-nnnnnnnnnnagataatgtaga |
210 |
Q |
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| T |
49495873 |
agatagaattgattgttttttttttttagaggacgtagaattgatagttgttaagattgtagcctaatctagaacaatttttttttttagataatgtaga |
49495774 |
T |
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| Q |
211 |
ataagctttgataaaaacaattctaagaaaagcaaaacttatctttcaagattctt |
266 |
Q |
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| T |
49495773 |
ataagctttgataaaaacaattctaagaaaagcaaaacttatctttcaagattctt |
49495718 |
T |
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