View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7894_high_35 (Length: 276)
Name: NF7894_high_35
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 22359185 - 22358925
Alignment:
| Q |
1 |
ctcaataaaatatttaacaatgaccgagagaaaaactcgaagtcaatgatctttatgttatataatcttgaaggactaagagctctttcctcacaattca |
100 |
Q |
| |
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||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| |||| |
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| T |
22359185 |
ctcaataaaatatttgacaatgatagagaggaaaactcgaagtcaatgatctttatgctatataatcttgaaggactatgagctttttcctcacagttca |
22359086 |
T |
|
| Q |
101 |
atctcactcacaatattagcaaattgaaatcaaatatagnnnnnnntgtgtgactgtaaagctgcacttgcctgcgctcgtgatcatttgcttccactag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22359085 |
atctcactcacaatattagcaaattgaaatcaaatatacaacaaaatgtgtgactgtaaagatgcacttgcctgcgctcgtgatcatttgcttccactag |
22358986 |
T |
|
| Q |
201 |
cccgtgatcatttgcttccactctttaaggaagcattgaacatgattaggggtgtcccaaa |
261 |
Q |
| |
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|||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| |
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| T |
22358985 |
cccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaa |
22358925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 22369087 - 22368829
Alignment:
| Q |
1 |
ctcaataaaatatttaacaatgaccgagagaaaaactcgaagtcaatgatctttatgttatataatcttgaaggactaagagctctttcctcacaattca |
100 |
Q |
| |
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||||||||||||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||| |
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| T |
22369087 |
ctcaataaaatatttgacaatgatagagaggaagactcgaagtcaatgatctttatgctatataatcttgaaggactatgagctttttcctcaccattca |
22368988 |
T |
|
| Q |
101 |
atctcactcacaatattagcaaattgaaatcaaatatagnnnnnnntgtgtgactgtaaagctgcacttgcctgcgctcgtgatcatttgcttccactag |
200 |
Q |
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| T |
22368987 |
atctcactcacaat--tagcaaattgaaatcaaatatacaacaaaatgtgtgactgtaaagctgcacttgcctgcgctcgtgataacttgcttccactag |
22368890 |
T |
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| Q |
201 |
cccgtgatcatttgcttccactctttaaggaagcattgaacatgattaggggtgtcccaaa |
261 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
22368889 |
cccgtgatcatttgcttccactcttgaaggaagcattcaacatgattaggggtgtcccaaa |
22368829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 22437769 - 22437604
Alignment:
| Q |
34 |
aactcgaagtcaatgatctttatgttatataatcttgaaggactaagagctctttcctcacaattcaatctcactcacaatattagcaaattgaaatcaa |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22437769 |
aactcgaagtcaatgatctttatgttatataatcttgaaggactatgagctttttcctcacaattcaatctcactcacaatattagcaaattaaaatcaa |
22437670 |
T |
|
| Q |
134 |
atatagnnnnnnntgtgtgactgtaaagctgcacttgcctgcgctcgtgatcatttgcttccacta |
199 |
Q |
| |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22437669 |
atatacaacaaaatgtgtgactgtaacgctgcacttgcctgcgctcgtgatcatttgcttccacta |
22437604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 71 - 261
Target Start/End: Complemental strand, 22636619 - 22636426
Alignment:
| Q |
71 |
aaggactaagagctctttcctcacaattcaatctcactcacaatattag---caaattgaaatcaaatatagnnnnnnntgtgtgactgtaaagctgcac |
167 |
Q |
| |
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||||||||| |||| ||||||||| |||||||||||||||||||| ||| |||||| |||||||||||| ||||||||||||||| ||||| |
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| T |
22636619 |
aaggactaatagctttttcctcaccattcaatctcactcacaatactagtagcaaattaaaatcaaatatacaacaaaatgtgtgactgtaaagatgcac |
22636520 |
T |
|
| Q |
168 |
ttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccactctttaaggaagcattgaacatgattaggggtgtcccaaa |
261 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| |
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| T |
22636519 |
ttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaa |
22636426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 22445660 - 22445499
Alignment:
| Q |
8 |
aaatatttaacaatgaccgagagaaaaactcgaagtcaatgatctttatgttatataatcttgaaggactaagagctctttcctcacaattcaatctcac |
107 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||| |||| | ||||| |||| ||||||| |
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| T |
22445660 |
aaatatttatcaatgacatggacaaaaactcgaagtccatgatctttatgttatataatcttgaaggactaatagctttgtcctcgtcattc-atctcac |
22445562 |
T |
|
| Q |
108 |
tcacaatattagcaaattgaaatcaaatatagnnnnnnntgtgtgactgtaaagctgcacttg |
170 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
22445561 |
tcacaatattagcaaattgaaatcaaatatacaacaaaatgtgtgaccgtaaagctgcacttg |
22445499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 161 - 261
Target Start/End: Complemental strand, 22632885 - 22632785
Alignment:
| Q |
161 |
gctgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccactctttaaggaagcattgaacatgattaggggtgtcccaa |
260 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
22632885 |
gctgcattttcctgcgcttgtgatcatttgcttccactagcccgtgatcacttgcttccactcttgaaggaagcattcaacatgattaggggtgtcccaa |
22632786 |
T |
|
| Q |
261 |
a |
261 |
Q |
| |
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| |
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|
| T |
22632785 |
a |
22632785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 162 - 261
Target Start/End: Complemental strand, 22443770 - 22443671
Alignment:
| Q |
162 |
ctgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccactctttaaggaagcattgaacatgattaggggtgtcccaaa |
261 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| |||||||||||| |
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| T |
22443770 |
ctgcactttcctgcgctcgtgataacttgcttccactagcccgtgatcatttgcttccaatcttgaaggaagcattcaacatgattaagggtgtcccaaa |
22443671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 22631467 - 22631389
Alignment:
| Q |
183 |
atcatttgcttccactagcccgtgatcatttgcttccactctttaaggaagcattgaacatgattaggggtgtcccaaa |
261 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
22631467 |
atcatttgcttccactagcccgtgatcacttgcttccactcttgaaggaagcattcaacatgattaggggtgtcccaaa |
22631389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 162 - 261
Target Start/End: Complemental strand, 22354393 - 22354294
Alignment:
| Q |
162 |
ctgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccactctttaaggaagcattgaacatgattaggggtgtcccaaa |
261 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||| ||||||||||| || |||||||||| ||||||||| |
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| T |
22354393 |
ctgcactttcctgcgcccgtgatcacttgcttccgctagcccatgatcatttgcttccactcttgaaggaagcattcaatatgattagggttgtcccaaa |
22354294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 22468941 - 22468876
Alignment:
| Q |
188 |
ttgcttccactagcccgtgatcatttgcttccactctttaaggaagcattgaacatgattaggggt |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| |
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| T |
22468941 |
ttgcttccactagcccgtgatcatttgcttccgctcttcaaggaagcattcaacatgattaggggt |
22468876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 22638121 - 22638058
Alignment:
| Q |
198 |
tagcccgtgatcatttgcttccactctttaaggaagcattgaacatgattaggggtgtcccaaa |
261 |
Q |
| |
|
|||| |||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
22638121 |
tagctcgtgataaattgcttccactcttgaaggaagcattcaacatgattaggggtgtcccaaa |
22638058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 22437624 - 22437566
Alignment:
| Q |
203 |
cgtgatcatttgcttccactctttaaggaagcattgaacatgattaggggtgtcccaaa |
261 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||| ||||||||||||||||||||||| |
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|
| T |
22437624 |
cgtgatcatttgcttccactattaaaggtagcattcaacatgattaggggtgtcccaaa |
22437566 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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