View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7894_high_36 (Length: 264)
Name: NF7894_high_36
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7894_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 13052680 - 13052448
Alignment:
| Q |
16 |
atcatggtacacaacacaccaattcttagcggaaatgattttccatgctaggttagaaaatcacgtgtgtcgcacgtgggatccaaatcaagcaatttta |
115 |
Q |
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| T |
13052680 |
atcatggtacacaacacaccaattgttagcagaaatgattttccatgctaggttagaaaatcacgtgtgtcgcacgtgggatcctaatcaagcaatttta |
13052581 |
T |
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| Q |
116 |
ttctacataccattctacggtggactacacgcttcaagcatgttccgcgaggcgaatcatactcttcgcgactccctagctgttgatctagtcgatcatg |
215 |
Q |
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| T |
13052580 |
ttctatataccattctatggtggactacacgcgtcaagcatgttccgcgaagcgaatcacactctccgcgactccttagccgttgatctaatcgaccacg |
13052481 |
T |
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| Q |
216 |
tacaaagtctaccttggtggaatcgtcacaatg |
248 |
Q |
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| T |
13052480 |
tactaagtctaccttggtggaatcgtcacaatg |
13052448 |
T |
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