View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7894_high_45 (Length: 205)

Name: NF7894_high_45
Description: NF7894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7894_high_45
NF7894_high_45
[»] chr1 (23 HSPs)
chr1 (1-197)||(35204945-35205137)
chr1 (73-182)||(35212074-35212179)
chr1 (73-133)||(35190471-35190531)
chr1 (73-133)||(35270544-35270604)
chr1 (71-139)||(35476408-35476476)
chr1 (73-127)||(35295862-35295916)
chr1 (73-133)||(35276642-35276702)
chr1 (76-133)||(35263122-35263179)
chr1 (81-130)||(45525580-45525629)
chr1 (73-133)||(34309457-34309517)
chr1 (81-133)||(35147471-35147523)
chr1 (73-120)||(8639009-8639056)
chr1 (51-133)||(35224999-35225081)
chr1 (73-133)||(35200040-35200100)
chr1 (76-132)||(35219175-35219231)
chr1 (70-122)||(35248375-35248427)
chr1 (73-134)||(35208241-35208302)
chr1 (70-119)||(35252181-35252230)
chr1 (73-129)||(35189419-35189475)
chr1 (74-122)||(35194602-35194650)
chr1 (73-139)||(35281421-35281487)
chr1 (73-119)||(45531673-45531719)
chr1 (73-114)||(35216083-35216124)
[»] chr2 (2 HSPs)
chr2 (73-130)||(33138622-33138679)
chr2 (91-129)||(18558754-18558792)
[»] chr3 (5 HSPs)
chr3 (73-120)||(899766-899813)
chr3 (79-130)||(23331906-23331957)
chr3 (51-133)||(17664567-17664649)
chr3 (84-133)||(19246970-19247019)
chr3 (78-125)||(53924271-53924318)
[»] chr7 (1 HSPs)
chr7 (53-131)||(38631972-38632050)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 35204945 - 35205137
Alignment:
Q  1 catctcatcagcattcatctcaccaacctttatatcggcaacactcatatacttcttcaacttggaggtctaaattgaaaaactctcccatctcaatctc 100  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35204945 catctcattagcattcatctcaccaacctttatatcggcaatactcatatacttcttcaacttggaggtctaaattgaaaaaatctcccatctcaatctc 35205044  T
Q  101 caaccacccatcacttctcacactaggacgttgtagtccaacaactatatatgtcgtccaacactctcagaacccaataccagcttctatctatgct 197  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35205045 caaccacccatcacttctcacattaggacgctgtagtccaacaac----tatgtcgtccaacactctcagaacccaataccagcttctatctatgct 35205137  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 35212074 - 35212179
Alignment:
Q  73 aattgaaaaactctcccatctcaatctccaaccacccatcacttctcacactaggacgttgtagtccaacaactatatatgtcgtccaacactctcagaa 172  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||    |||||| |||| | |||||||||    
T  35212074 aattgaagaactctcccatctcaatctccaaccacccatcacttctcacactcggacgtggtagtcctacaac----tatgtcctccacctctctcagaa 35212169  T
Q  173 cccaatacca 182  Q
    | ||||||||    
T  35212170 cacaatacca 35212179  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 35190471 - 35190531
Alignment:
Q  73 aattgaaaaactctcccatctcaatctccaaccacccatcacttctcacactaggacgttg 133  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35190471 aattgaagaactctccgatctcaatctccaaccacccatcacttctcacactaggacgttg 35190531  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 35270544 - 35270604
Alignment:
Q  73 aattgaaaaactctcccatctcaatctccaaccacccatcacttctcacactaggacgttg 133  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35270544 aattgaagaactcccccatctcaatctccaaccacccatcacttctcacactaggacgttg 35270604  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 35476408 - 35476476
Alignment:
Q  71 taaattgaaaaactctcccatctcaatctccaaccacccatcacttctcacactaggacgttgtagtcc 139  Q
    |||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  35476408 taaattaaagaactctcccatctcaatctccaaccacccatcacgtctcacactaggacgtcgtagtcc 35476476  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 35295916 - 35295862
Alignment:
Q  73 aattgaaaaactctcccatctcaatctccaaccacccatcacttctcacactagg 127  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35295916 aattgaagaactctcccatctcaatctccaaccacccatcacttctcacactagg 35295862  T

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Target: chr1; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 35276642 - 35276702
Alignment:
Q  73 aattgaaaaactctcccatctcaatctccaaccacccatcacttctcacactaggacgttg 133  Q
    ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  35276642 aattgaagaactcccccatctcaatctccaaccacccatctcttctcacactaggacgttg 35276702  T

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Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 35263122 - 35263179
Alignment:
Q  76 tgaaaaactctcccatctcaatctccaaccacccatcacttctcacactaggacgttg 133  Q
    |||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  35263122 tgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttg 35263179  T

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Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 45525580 - 45525629
Alignment:
Q  81 aactctcccatctcaatctccaaccacccatcacttctcacactaggacg 130  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45525580 aactctcccatctcaatctccaaccacccatcacttctcacaccaggacg 45525629  T

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Target: chr1; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 34309457 - 34309517
Alignment:
Q  73 aattgaaaaactctcccatctcaatctccaaccacccatcacttctcacactaggacgttg 133  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||| ||| ||||||||||    
T  34309457 aattgaagaactctcccatctcaatctccaaccatccatcacttcttacattaggacgttg 34309517  T

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Target: chr1; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 35147471 - 35147523
Alignment:
Q  81 aactctcccatctcaatctccaaccacccatcacttctcacactaggacgttg 133  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  35147471 aactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttg 35147523  T

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Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 8639009 - 8639056
Alignment:
Q  73 aattgaaaaactctcccatctcaatctccaaccacccatcacttctca 120  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  8639009 aattgaagaactctcccatctcagtctccaaccacccatcacttctca 8639056  T

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Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 35224999 - 35225081
Alignment:
Q  51 acttcttcaacttggaggtctaaattgaaaaactctcccatctcaatctccaaccacccatcacttctcacactaggacgttg 133  Q
    ||||||||| |||  ||| || || |||| |||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||    
T  35224999 acttcttcatcttctaggcctgaaatgaagaactctcccatctcaatctctaaccagccatcgcttctcacattaggacgttg 35225081  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 35200040 - 35200100
Alignment:
Q  73 aattgaaaaactctcccatctcaatctccaaccacccatcacttctcacactaggacgttg 133  Q
    ||||||| ||||| || || |||||||||||||||||||| |||||||||||||| |||||    
T  35200040 aattgaagaactccccgatttcaatctccaaccacccatcgcttctcacactagggcgttg 35200100  T

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Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 35219175 - 35219231
Alignment:
Q  76 tgaaaaactctcccatctcaatctccaaccacccatcacttctcacactaggacgtt 132  Q
    |||| ||||||||||||||| | ||||||||| |||||||||||| |||||||||||    
T  35219175 tgaagaactctcccatctcagtttccaaccactcatcacttctcatactaggacgtt 35219231  T

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Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 35248375 - 35248427
Alignment:
Q  70 ctaaattgaaaaactctcccatctcaatctccaaccacccatcacttctcaca 122  Q
    |||||||||| ||||| |||||||||||||| ||||||||||| |||||||||    
T  35248375 ctaaattgaagaactcccccatctcaatctcaaaccacccatcgcttctcaca 35248427  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 35208241 - 35208302
Alignment:
Q  73 aattgaaaaactctcccatctcaatctccaaccacccatcacttctcacactaggacgttgt 134  Q
    ||||||| ||||| || ||||||||||||||||||||||| ||||||||  |||| ||||||    
T  35208241 aattgaagaactccccaatctcaatctccaaccacccatcgcttctcacgttagggcgttgt 35208302  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 35252181 - 35252230
Alignment:
Q  70 ctaaattgaaaaactctcccatctcaatctccaaccacccatcacttctc 119  Q
    |||||||||| ||||| || ||||||||||| ||||||||||||||||||    
T  35252181 ctaaattgaagaactccccaatctcaatctcaaaccacccatcacttctc 35252230  T

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Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 35189419 - 35189475
Alignment:
Q  73 aattgaaaaactctcccatctcaatctccaaccacccatcacttctcacactaggac 129  Q
    ||||||| ||||| |||||  ||||||||||||||| |||||||||||||| |||||    
T  35189419 aattgaagaactcccccattccaatctccaaccacctatcacttctcacacaaggac 35189475  T

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Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 35194602 - 35194650
Alignment:
Q  74 attgaaaaactctcccatctcaatctccaaccacccatcacttctcaca 122  Q
    |||||| ||||| ||||| |||||||||||||||||||| |||||||||    
T  35194602 attgaagaactcccccatttcaatctccaaccacccatcgcttctcaca 35194650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 35281421 - 35281487
Alignment:
Q  73 aattgaaaaactctcccatctcaatctccaaccacccatcacttctcacactaggacgttgtagtcc 139  Q
    ||||||| |||||||||||||| ||||||||  | ||||||||||||||  | ||||||| ||||||    
T  35281421 aattgaagaactctcccatctcgatctccaaaaatccatcacttctcacttttggacgttctagtcc 35281487  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 45531673 - 45531719
Alignment:
Q  73 aattgaaaaactctcccatctcaatctccaaccacccatcacttctc 119  Q
    ||||||| ||||||||||||||||||||| |||||| | ||||||||    
T  45531673 aattgaagaactctcccatctcaatctcccaccacctaccacttctc 45531719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 35216083 - 35216124
Alignment:
Q  73 aattgaaaaactctcccatctcaatctccaaccacccatcac 114  Q
    ||||||| |||||||  |||||||||||||||||||||||||    
T  35216083 aattgaagaactctctgatctcaatctccaaccacccatcac 35216124  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 33138679 - 33138622
Alignment:
Q  73 aattgaaaaactctcccatctcaatctccaaccacccatcacttctcacactaggacg 130  Q
    ||||||| || | ||||||||||||||||||||||||||||||||||||| |||||||    
T  33138679 aattgaagaattttcccatctcaatctccaaccacccatcacttctcacagtaggacg 33138622  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 18558792 - 18558754
Alignment:
Q  91 tctcaatctccaaccacccatcacttctcacactaggac 129  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  18558792 tctcaatctccaaccacccatcacgtctcacactaggac 18558754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 899813 - 899766
Alignment:
Q  73 aattgaaaaactctcccatctcaatctccaaccacccatcacttctca 120  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||    
T  899813 aattgaataactctcccatctcaatctccaaccacccatcgcttctca 899766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 23331906 - 23331957
Alignment:
Q  79 aaaactctcccatctcaatctccaaccacccatcacttctcacactaggacg 130  Q
    |||| ||||||||||||||||||||||||||||| ||||||||| |||||||    
T  23331906 aaaattctcccatctcaatctccaaccacccatcgcttctcacattaggacg 23331957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 17664649 - 17664567
Alignment:
Q  51 acttcttcaacttggaggtctaaattgaaaaactctcccatctcaatctccaaccacccatcacttctcacactaggacgttg 133  Q
    ||||||||| ||| ||||  | |||| || || ||||||||||||||||||||||| ||||||| ||| ||||||||||||||    
T  17664649 acttcttcatctttgaggcttgaattaaagaattctcccatctcaatctccaaccatccatcacatctaacactaggacgttg 17664567  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 19247019 - 19246970
Alignment:
Q  84 tctcccatctcaatctccaaccacccatcacttctcacactaggacgttg 133  Q
    ||||||||||||||||||||||| ||||||| ||| ||||||||||||||    
T  19247019 tctcccatctcaatctccaaccatccatcacatctaacactaggacgttg 19246970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 53924318 - 53924271
Alignment:
Q  78 aaaaactctcccatctcaatctccaaccacccatcacttctcacacta 125  Q
    |||||||| |||||||||||||||||||||||||| || |||| ||||    
T  53924318 aaaaactcccccatctcaatctccaaccacccatcgctcctcaaacta 53924271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 38631972 - 38632050
Alignment:
Q  53 ttcttcaacttggaggtctaaattgaaaaactctcccatctcaatctccaaccacccatcacttctcacactaggacgt 131  Q
    ||||||| |||  |||||| || |||| ||||||||||| | ||||||||||||||||||  |||| ||||||| ||||    
T  38631972 ttcttcatctttaaggtctgaagtgaagaactctcccatatgaatctccaaccacccatcgtttcttacactagcacgt 38632050  T

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